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ARS Culture Collection

The ARS Culture Collection data portal is a data sharing platform for people working with microbial strains housed in the ARS Culture Collection (NRRL) (https://nrrl.ncaur.usda.gov/). The user community can access data already generated by other researchers on strains of interest and can contribute data generated on strains they requested from the collection. The vision of this initiative is to create a virtuous cycle of data sharing, in which the ARS Culture Collection provides microbial strains to the user community at no charge, and the user community in return deposits data generated on those strains to a publicly available database such as NCBI. This will continue to add value to strains in the collection and accelerate the speed of research through data access.

The ARS Culture Collection (NRRL) is one of the world’s largest publicly accessible microbial collections and is responsible for breakthroughs that have increased agricultural productivity, enabled people to live longer and healthier lives, and contributed to a $175 billion per year bioeconomy in the U.S. At the heart of NRRL’s impact is a collection of nearly 100,000 bacteria and fungi developed through more than 100 years of scientific discovery. The NRRL is a unique and irreplaceable scientific asset that annually provides over 4,000 microbial cultures to scientists in more than 40 countries. These cultures have contributed to scientific advances described in more than 68,000 publications and patents as listed on Google Scholar.

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ARS Culture Collection Datasets

1295 datasets

Producer of clavulanic acid and cephamycin C

National Center for Biotechnology Information
    Streptomyces clavuligerus ATCC 27064. Streptomyces clavuligerus ATCC 27064 (NRRL 3585) is the type strain and will be used for comparative analysis.

    Causes hypersensitivity pneumonitis

    National Center for Biotechnology Information
      Saccharomonospora viridis DSM 43017. This strain (ATCC 15386; P101; NBRC 12207; JCM 3036; NRRL B-3044; VKM Ac-681) is the type strain for this species.

      Lodderomyces elongisporus NRRL YB-4239 RefSeq Genome

      National Center for Biotechnology Information
        The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA12899). Annotation on the RefSeq genomic records is propagated from the INSDC submission.

        Producer of clavulanic acid and cephamycin C

        National Center for Biotechnology Information
          Streptomyces clavuligerus ATCC 27064. Streptomyces clavuligerus ATCC 27064 (NRRL 3585) is the type strain and will be used for comparative analysis.

          WGS sequencing, assembly, and annotation

          National Center for Biotechnology Information
            The Broad Institute sequenced the genome of Fusarium oxysporum f. sp. lycopersici, strain 4287 (race 2, VCG 0030) at 6X coverage using whole genome shotgun (WGS) sequencing.

            Neosartorya fischeri NRRL 181 RefSeq Genome

            National Center for Biotechnology Information
              The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA15672). Annotation on the RefSeq genomic records is propagated from the INSDC submission.

              Aspergillus clavatus NRRL 1 RefSeq Genome

              National Center for Biotechnology Information
                The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA15664). Annotation on the RefSeq genomic records is propagated from the INSDC submission.

                Source of the antibiotic erythromycin

                National Center for Biotechnology Information
                  Saccharopolyspora erythraea NRRL 2338. Saccharopolyspora erythraea NRRL 2338 (ATCC 11635) is being sequenced for comparative genome analysis.