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AgBioData

AgBioData is a consortium of people working at agricultural biological databases, data archives and knowledgebases who strives to identify common issues in database development, curation, and management, with the goal of creating database products that are more Findable, Accessible, Interoperable, and Reusable (FAIR). Currently, there are over 150 people from 30 different databases and resources within the AgBioData consortium. We strive to promote authentic, detailed and accurate communication between all parties involved in scientific data.

For all agriculturally database personnel, we recommend joining the AgBioData consortium, attending the monthly conference call seminars, joining a working group, and working with your counterparts in other databases. A little time invested now in working together and applying common standards can save a lot of time later and prevent duplicated efforts in the development of tools and resources.

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AgBioData Datasets

38 datasets

T3 Wheat

    [The Triticeae Toolbox Wheat](https://wheat.triticeaetoolbox.org) (T3 Wheat) is a repository for public wheat data generated by the Wheat Coordinated Agricultural Project (Wheat CAP).

    T3 Barley

      [The Triticeae Toolbox Barley](https://barley.triticeaetoolbox.org) (T3 Barley) is an extension of The Hordeum Toolbox (THT), which was created by the preceding Barley CAP. T3 Barley incorporates all of the THT data.

      T3 Oat

        [The Triticeae Toolbox Oat](https://oat.triticeaetoolbox.org) (T3 Oat) is the repository of oat phenotype and genotype data for the Global Oat Genetics Database.

        The Triticeae Toolbox

          [The Triticeae Toolbox](https://triticeaetoolbox.org/) (T3) webportal hosts data generated by the Triticeae Coordinated Agricultural Project (CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). T3 contains SNP, phenotypic, and pedigree data from wheat and barley germplasm in the Triticeae CAP integrating rapidly expanding DNA marker and sequence data with traditional phenotypic data.

          Germplasm Resources Information Network (GRIN)

            The Germplasm Resources Information Network (GRIN) is an online portal for information about agricultural genetic resources that are managed by the Agricultural Research Service of USDA, along with U.S. partnering organizations.

            MaizeGDB

              MaizeGDB is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays. Genomic, genetic, sequence, germplasm, gene product, metabolic pathways, functional characterization, literature reference, diversity, and expression are among the datatypes stored at MaizeGDB. At the project's website are custom interfaces enabling researchers to browse data and to seek out specific information matching explicit search criteria. First released in 1991 with the name MaizeDB, the Maize Genetics and Genomics Database, now MaizeGDB (since 2003), is funded, developed, and hosted by the USDA-ARS located at Ames, Iowa.

              Data from: Mapping the Quantitative Field Resistance to Stripe Rust in a Hard Winter Wheat Population ‘Overley’ × ‘Overland’

                This study was conducted to identify quantitative trait loci (QTL) associated with field resistance to stripe rust, also known as yellow rust (YR), in hard winter wheat. Stripe rust infection type and severity were rated in recombinant inbred lines (RILs, n=204) derived from a cross between hard red winter wheat cultivars ‘Overley’ and ‘Overland’ in replicated field trials in the Great Plains and Pacific Northwest.