myPhyloDB is an open-source software package aimed at developing a user-friendly web-interface for accessing and analyzing all of your laboratory's microbial ecology data (currently supported project types: soil, air, water, microbial, and human-associated). The storage and handling capabilities of myPhyloDB archives users' raw sequencing files, and allows for easy selection of any combination of projects/samples from all of your projects using the built-in SQL database. The data processing capabilities of myPhyloDB are also flexible enough to allow the upload, storage, and analysis of pre-processed data or raw (454 or Illumina) data files using the built-in versions of Mothur and R.

Agroecosystems & Environment

Compilation of climate data from heterogeneous networks across the Hawaiian Islands

This paper provides: (1) a summary of the available climate data in Hawai‘i including a detailed description of the various meteorological observation networks and data accessibility, and (2) a quality-controlled meteorological dataset across the Hawaiian Islands for the 25-year period 1990-2014. The dataset draws on observations from 471 climate stations and includes rainfall, maximum and minimum surface air temperature, relative humidity, wind speed, downward shortwave and longwave radiation data.

Agroecosystems & Environment

Arctic Peregrine Falcon Abundance on Cliffs Along the Colville River, Alaska, 1981-2002 and Covariate Input Files

This data set consists of fourteen data files. Rcode_arctic_peregrine_abundance.R contains R code that was used to analyze Arctic peregrine falcon data collected between 1981 and 2002. The code primarily uses the R package "UNMARKED" and is based on the Dail-Madsen model for estimating population abundance. To run this code in an R environment, download the file and open it in an R interpreter (such as RStudio). The remaining files are all covariate matrices that act as inputs to the R code.

Arctic Peregrine Falcon

Raw Light-Level Geolocator Data from Golden-Winged Warblers Breeding at Three Sites in North America

21 raw light-level data files (.lig) from geolocators (Biotrak, Wareham, UK; model ML6240, 2-min light-sampling regime) deployed on 20 individual Golden-winged Warblers from three breeding locations in North America. These data were collected to provide information on the migration routes and timing, and nonbreeding locations of individuals from these populations to inform conservation and management strategies. These data are being released following the publication of these findings.

Golden-Winged Warbler

White-tailed deer density estimates across the eastern United States, 2008

The QDMA spatial map depicting deer density (deer per square mile) was digitized across the eastern United States. Estimates of deer density were: White = rare, absent, or urban area with unknown population, Green = less than 15 deer per square mile, Yellow = 15 to 30 deer per square mile, Orange = 30 to 40 deer per square mile, or Red = greater than 45 deer per square mile. These categories represent coarse deer density levels as identified in the QDMA report in 2009 and should not be used to represent current or future deer densities across the study region.

map of white-tailed deer estimates