Ag Data Commons
Browse
1/1
2 files

Angus Sequence Dataset Collection

dataset
posted on 2023-11-30, 10:57 authored by Harvey Blackburn

Whole genome sequence data for Bovidae Bos taurus - beef Angus, 30 animals in total. The data is in "fastq" format. There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is attached. In the diagram, the two reads would correspond to read 1 and read 3.


Resources in this dataset:

  • Resource Title: CSU_136201_SampleSheet.csv - list of all Angus sequence files.

    File Name: CSU_136201_SampleSheet.csv

    Resource Description: This spreadsheet lists all 210 data files associated with the sequencing of these 30 Angus animals


  • Resource Title: Sequence Reads Diagram.

    File Name: SequenceReads.png

    Resource Description: There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. In the diagram, the two reads would correspond to read 1 and read 3.

Funding

Agricultural Research Service

History

Data contact name

Blackburn, Harvey

Data contact email

harvey.blackburn@usda.gov

Publisher

Ag Data Commons

Temporal Extent Start Date

2012-01-01

Temporal Extent End Date

2012-12-31

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-106.56610600168,41.222307724193]},"type":"Feature","properties":{}}]}

Geographic location - description

John E. Rouse-Colorado State University Beef Improvement Center, WY

ISO Topic Category

  • biota
  • farming

National Agricultural Library Thesaurus terms

nucleotide sequences; Bovidae; cattle; beef; Angus; germplasm

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 101

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Blackburn, Harvey (2022). Angus Sequence Dataset Collection. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1529241

Usage metrics

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC