The Animal Quantitative Trait Loci Database (Animal QTLdb)

The Animal Quantitative Trait Loci (QTL) Database (Animal QTLdb) strives to collect all publicly available trait mapping data, i.e. QTL (phenotype/expression, eQTL), candidate gene and association data (GWAS), and copy number variations (CNV) mapped to livestock animal genomes, in order to facilitate locating and comparing discoveries within and between species. New data and database tools are continually developed to align various trait mapping data to map-based genome features such as annotated genes.

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Field	Value
Tags	QTL SNP association livestock traits
Modified	2023-03-15
Release Date	2017-11-27
Identifier	efe2b4a2-9484-4141-a2a6-6529db9d383e
Spatial / Geographical Coverage Area	POLYGON ((-339.22210693359 70.504741748745, -379.74792480469 18.440530225107, -338.60687255859 -37.612055711413, -294.05181884766 20.825442642792, -244.85778808594 -34.63998735603, -185.16906738281 -45.991237199238, -180.64544677734 66.92037199181, -86.687622070312 72.760809097727, -53.418273925781 50.623330620643, -29.652099609375 -6.6482391567023, -69.005126953125 -54.201010239739, -201.43981933594 72.956704865318, -260.83740234375 76.545606349643, -255.29205322266 74.692679271003, -255.234375 74.692679271003))
Publisher	National Animal Genome Research Program (NAGRP)
Spatial / Geographical Coverage Location	Iowa State University
Temporal Coverage	April 29, 2022
License	U.S. Public Domain
Contact Name	Hu, Zhiliang
Contact Email	zhu@iastate.edu
Public Access Level	Public

Extended Metadata:

Field	Value
Authors	Hu, Zhiliang (ORCID)
Peer Reviewed	No
Intended Use	Published data curated for data comparisons and meta-analysis
Funding Sources	U.S. Department of Agriculture
Primary Article	Hu, Z.-L., Fritz, E. R., & Reecy, J. M. (2007). AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond. Nucleic Acids Research, 35(Database), D604-D609. https://doi.org/10.1093/nar/gkl946
Related Articles	Hu, Z.-L., & Reecy, J. M. (2007). Animal QTLdb: beyond a repository. Mammalian Genome, 18(1), 1-4. https://doi.org/10.1007/s00335-006-0105-8 AgID: 10113/3104309 Hu, Z.-L., Park, C. A., & Reecy, J. M. (2021). Bringing the Animal QTLdb and CorrDB into the future: meeting new challenges and providing updated services. Nucleic Acids Research, 50(D1), D956-D961. https://doi.org/10.1093/nar/gkab1116 Hu, Z.-L., Park, C. A., & Reecy, J. M. (2015). Developmental progress and current status of the Animal QTLdb. Nucleic Acids Research, 44(D1), D827-D833. https://doi.org/10.1093/nar/gkv1233 Hu, Z.-L., Park, C. A., & Reecy, J. M. (2018). Building a livestock genetic and genomic information knowledgebase through integrative developments of Animal QTLdb and CorrDB. Nucleic Acids Research, 47(D1), D701-D710. https://doi.org/10.1093/nar/gky1084 Hu, Z.-L., Park, C. A., & Reecy, J. M. (2021). Bringing the Animal QTLdb and CorrDB into the future: meeting new challenges and providing updated services. Nucleic Acids Research, 50(D1), D956-D961. https://doi.org/10.1093/nar/gkab1116
Product Type	Dataset

Field	Value
ISO Topic(s)	biota
State or Territory	Iowa
National Agricultural Library Thesaurus Term	animals quantitative trait loci databases phenotype genes livestock swine cattle chickens chromosome mapping bacterial artificial chromosomes single nucleotide polymorphism humans researchers
Ag Data Commons Keywords	Genomics & Genetics Genomics & Genetics Phenotypes Genomics & Genetics Genome Genomics & Genetics Genome Genome annotation Animals & Livestock
Program	AgBioData

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