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Supplemental Data 4. Differential expression analysis of Summer switchgrass and BCK60 sorghum treatments in S. flava at 12 and 24 hours

Reads were mapped back to the transcriptome assembly using bowtie2 and RSEM and differential expression analysis was performed using edgeR as described in the Materials and Methods. Unigenes with log fold-change values > 0 are upregulated in the Summer treatment relative to the BCK60 treatment while unigenes with log fold-change values < 0 are downregulated in this comparison. Log fold-change and FDR corrected-p-value thresholds were set at 0.25 and 0.05, respectively. Tab labeled 12 represents 12 hr post infestation and tab labeled 24 represents 24 hr post infestation.

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