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Barley Genotyping SNPs Annotated using SNPMeta

genotype illustration

SNPs annotations were derived from publicly available DNA sequences in GenBank using BLAST. Gene name, functional impact, and other information are returned using the program SNPMeta available for download at https://github.com/MorrellLAB/SNPMeta.

These are SNPs on two Illumina GoldenGate genotyping arrays and one 9k iSelect genotyping array. The ascertainment scheme for the SNPs is available in Close, Timothy J., et al. "Development and implementation of high-throughput SNP genotyping in barley." BMC genomics 10.1 (2009): 1.

Sponsorship: US National Institute for Food and Agriculture (NIFA) (2011-68002-30029); USDA National Needs Fellowship (USDA NIFA 2011-38420-20068); USDA - Agricultural Research Service (Appropriation No. 5430-21000-006-00D); Kansas State University

Dataset Info

These fields are compatible with DCAT, an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web.
FieldValue
Authors
Kono, Thomas J.Y.
(ORCID)
Seth, Kiran
Poland, Jesse A.
(ORCID)
Morrell, Peter L.
(ORCID)
Product Type
Genome/Genetics Data
Temporal Coverage
2013/2013
Publisher
University of Minnesota
Contact Name
Kono, Thomas J.Y.
Contact Email
Public Access Level
Public
Preferred Dataset Citation
Kono, Thomas J Y; Kiran, Seth; Poland, Jesse A; Morrell, Peter L. (2016). Barley Genotyping SNPs Annotated using SNPMeta. Retrieved from the Data Repository for the University of Minnesota, http://doi.org/10.13020/D63K53.
Primary Article

Kono, T., Seth, K., Poland, J., & Morrell, P. (2013). SNPMeta: SNP annotation and SNP metadata collection without a reference genome. Molecular Ecology Resources, 14(2), 419-425.

Cites Other Datasets
License
Funding Source(s)
National Institute of Food and Agriculture
2011-68002-30029
National Institute of Food and Agriculture
2011-38420-20068
Agricultural Research Service
5430-21000-006-00D
Dataset DOI (digital object identifier)
10.13020/D63K53
Modified Date
2019-02-09
Release Date
2018-06-06
Ag Data Commons Keywords: 
  • Genomics & Genetics
  • Genomics & Genetics
  • Genome
ISO Topic(s):