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Blattella germanica Official Gene Set OGSv1.0

The Blattella germanica genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The Blattella germanica research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.0. The general procedure for generating this OGS is outlined here: https://github.com/NAL-i5K/GFF3toolkit/. QC of community-curated models from the Apollo software was performed using the GFF3toolkit function gff3_QC.py, and errors were fixed using gff3_fix.py. OGSv1.0 was generated by merging the gene set BGER_v0.6.2 (provided by E. Jongepier, doi:10.1038/s41559-017-0459-1) with 1) QC'd and error-corrected community-curated models and 2) semi-automatically predicted miRNAs (references: doi:10.1038/srep37736 and doi.org/10.1186/s12864-017-4177-5) . Subsequently, i5k Workspace (https://i5k.nal.usda.gov/) IDs were generated for all features.

Dataset Info

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FieldValue
Authors
Jongepier, Evelien
(ORCID)
Harrison, Mark C.
(ORCID)
Jennings, Emily C.
(ORCID)
Martynov, Alexander
(ORCID)
Piulachs, Maria Dolors
(ORCID)
Poelchau, Monica
(ORCID)
Rosendale, Andrew J.
(ORCID)
Scanlan, Jack
Wada-Katsumata, Ayako
(ORCID)
Ylla, Guillem
(ORCID)
Robertson, Hugh M.
(ORCID)
Schal, Coby
(ORCID)
Belles, Xavier
(ORCID)
Richards, Stephen
(ORCID)
Bornberg-Bauer, Erich G.
(ORCID)
Product Type
Genome/Genetics Data
Equipment or Software Used
Publisher
Ag Data Commons
Contact Name
Harrison, Mark
Contact Email
Public Access Level
Public
Related Article

Harrison, M. C., Jongepier, E., Robertson, H. M., Arning, N., Bitard-Feildel, T., Chao, H., ... & Gowin, J. (2018). Hemimetabolous genomes reveal molecular basis of termite eusociality. Nature ecology & evolution, 2(3), 557.

Methods Citation

Ylla, G., Fromm, B., Piulachs, M., & Belles, X. (2016). The microRNA toolkit of insects. Scientific Reports, 6(1).

Ylla, G., Piulachs, M., & Belles, X. (2017). Comparative analysis of miRNA expression during the development of insects of different metamorphosis modes and germ-band types. BMC Genomics, 18(1).

Cites Other Datasets
License
Funding Source(s)
Deutsche Forschungsgemeinschaft
BO2544/11-1
CGL2012-36251
CGL2015-64727-P
CGL2016-76011-R
U.S. Department of Housing and Urban Development
NCHHU-0017-13
2014 SGR 619
National Science Foundation
IOS-1557864
Alfred P. Sloan Foundation
2013-5-35 MBE
P30ES025128
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1461491
Modified Date
2018-12-06
Release Date
2018-04-27
Ag Data Commons Keywords: 
  • Genomics & Genetics
  • Genome
  • Genome annotation
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
  • Expression analysis
  • RNA Seq
  • Genomics & Genetics
  • Expression analysis
National Agricultural Library Thesaurus Term: 
ISO Topic(s):