Blattella germanica Official Gene Set OGSv1.0

The Blattella germanica genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The Blattella germanica research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.0. The general procedure for generating this OGS is outlined here: https://github.com/NAL-i5K/GFF3toolkit/. QC of community-curated models from the Apollo software was performed using the GFF3toolkit function gff3_QC.py, and errors were fixed using gff3_fix.py. OGSv1.0 was generated by merging the gene set BGER_v0.6.2 (provided by E. Jongepier, doi:10.1038/s41559-017-0459-1) with 1) QC'd and error-corrected community-curated models and 2) semi-automatically predicted miRNAs (references: doi:10.1038/srep37736 and doi.org/10.1186/s12864-017-4177-5) . Subsequently, i5k Workspace (https://i5k.nal.usda.gov/) IDs were generated for all features.

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Blattella germanica Official Gene Set OGSv1.0Data
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Field	Value
Tags	Blattella germanica German cockroach genome annotation
Modified	2019-08-05
Release Date	2018-07-26
Identifier	74a693e4-fa39-40cc-ac1d-a01b15b7ed78
Publisher	Ag Data Commons
License	Creative Commons Attribution Share-Alike
Contact Name	Harrison, Mark
Contact Email	m.harrison@uni-muenster.de
Public Access Level	Public

Extended Metadata:

Field	Value
Authors	Jongepier, Evelien (ORCID) Harrison, Mark C. (ORCID) Jennings, Emily C. (ORCID) Martynov, Alexander (ORCID) Piulachs, Maria Dolors (ORCID) Poelchau, Monica (ORCID) Rosendale, Andrew J. (ORCID) Scanlan, Jack Wada-Katsumata, Ayako (ORCID) Ylla, Guillem (ORCID) Robertson, Hugh M. (ORCID) Schal, Coby (ORCID) Belles, Xavier (ORCID) Richards, Stephen (ORCID) Bornberg-Bauer, Erich G. (ORCID)
Peer Reviewed	No
Equipment or Software Used	GFF3toolkit
Funding Sources	Deutsche Forschungsgemeinschaft BO2544/11-1 U.S. Department of Housing and Urban Development NCHHU-0017-13 National Science Foundation IOS-1557864 Alfred P. Sloan Foundation 2013-5-35 MBE
Related Articles	Harrison, M. C., Jongepier, E., Robertson, H. M., Arning, N., Bitard-Feildel, T., Chao, H., Childers, C. P., Dinh, H., Doddapaneni, H., Dugan, S., Gowin, J., Greiner, C., Han, Y., Hu, H., Hughes, D. S. T., Huylmans, A.-K., Kemena, C., Kremer, L. P. M., Lee, S. L., Lopez-Ezquerra, A., Mallet, L., Monroy-Kuhn, J. M., Moser, A., Murali, S. C., Muzny, D. M., Otani, S., Piulachs, M.-D., Poelchau, M., Qu, J., Schaub, F., Wada-Katsumata, A., Worley, K. C., Xie, Q., Ylla, G., Poulsen, M., Gibbs, R. A., Schal, C., Richards, S., Belles, X., Korb, J., & Bornberg-Bauer, E. (2018). Hemimetabolous genomes reveal molecular basis of termite eusociality. Nature Ecology & Evolution, 2(3), 557-566. https://doi.org/10.1038/s41559-017-0459-1
Method Citation	Ylla, G., Fromm, B., Piulachs, M.-D., & Belles, X. (2016). The microRNA toolkit of insects. Scientific Reports, 6(1). https://doi.org/10.1038/srep37736 Ylla, G., Piulachs, M.-D., & Belles, X. (2017). Comparative analysis of miRNA expression during the development of insects of different metamorphosis modes and germ-band types. BMC Genomics, 18(1). https://doi.org/10.1186/s12864-017-4177-5
Dataset DOI (digital object identifier)	10.15482/USDA.ADC/1461491
Product Type	Dataset
Cites Other Datasets	Hemimetabolous genomes reveal molecular basis of termite eusociality

Field	Value
OSTI Identifier
ISO Topic(s)	biota
National Agricultural Library Thesaurus Term	genomics Blattella germanica genes prediction models microRNA
Ag Data Commons Keywords	Genomics & Genetics Genome Genome annotation Genomics & Genetics Genome Genomics & Genetics Expression analysis RNA Seq Genomics & Genetics Expression analysis
Program	Blattella germanica Organism project Insects 5K – i5K

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