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Cephus cinctus Official Gene Set OGSv1.0 and OGSv1.1

The Official Gene Set cepcin_OGSv1.0 is an integration (NCBI Cephus cinctus Annotation Release 101) from NCBI's eukaryotic annotation pipeline v8.0 with manual annotations by the research community (done via the Apollo manual annotation software). QC and Merge of the dataset was performed using the GFF3toolkit software (https://github.com/NAL-i5K/GFF3toolkit).

The Official Gene Set cepcin_OGSv1.1 is an update from Cephus cinctus Official Gene Set 1.0 (cepcin_OGSv1.0). Updates were performed to the feature metadata, including cross-references and identifiers from NCBI-derived models. Protein-coding genes predicted by NCBI on mitochondrial DNA were added, and all tRNAs and rRNAs removed (these are still available from NCBI and at the i5k Workspace).

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FieldValue
Tags
Insects
i5k
Cephus cinctus
Modified
2020-05-18
Release Date
2018-11-30
Identifier
ed37986b-d3c7-4ca3-9d45-5e7c04b912e2
Publisher
Ag Data Commons
License
U.S. Public Domain
Contact Name
Poelchau, Monica
Contact Email
monica.poelchau@ars.usda.gov
Public Access Level
Public
Extended Metadata: 
FieldValue
Authors
Robertson, Hugh M. (ORCID)
Peer Reviewed
No
Equipment or Software Used
GFF3toolkit software
Apollo annotation software
NCBI eukaryotic annotation pipeline
Funding Sources
U.S. Department of Agriculture
AG2008-35302-188815
Related Articles

Robertson, H. M., Waterhouse, R. M., Walden, K. K. O., Ruzzante, L., Reijnders, M. J. M. F., Coates, B. S., Legeai, F., Gress, J. C., Biyiklioglu, S., Weaver, D. K., Wanner, K. W., & Budak, H. (2018). Genome sequence of the wheat stem sawfly, Cephus cinctus, representing an early-branching lineage of the Hymenoptera, illuminates evolution of hymenopteran chemoreceptors. Genome Biology and Evolution. https://doi.org/10.1093/gbe/evy232
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1484022
Product Type
Dataset
Related Content
NCBI Cephus cinctus Annotation Release 101
FieldValue
OSTI Identifier
ISO Topic(s)
biota
National Agricultural Library Thesaurus Term
Cephus cinctus
genomics
genes
prediction
sequence analysis
nucleotide sequences
Program
Cephus cinctus
Insects 5K – i5K

Suggested Citation:

(dataset) Robertson, Hugh M. (2018). Cephus cinctus Official Gene Set OGSv1.0 and OGSv1.1. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1484022. Accessed 2023-06-09.