U.S. flag

An official website of the United States government

License

U.S. Public Domain
[Open Data]

Other Access

The information on this page (the dataset metadata) is also available in these formats:

JSON RDF

via the DKAN API

Social

Cimex Lectularius Official Gene Set v1.1

The Baylor College of Medicine recently sequenced and annotated the Cimex lectularius genome as part of the i5k pilot project. The C. lectularius research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2.

The bed bug, Cimex lectularius, is a model organism for understanding dermonecrotic envenomation (sphingomylinase D). A key focus of research to understand neurotic fractions in venom. The bed bug also provides appropriate phylogenetic sampling across diversity of order Araneae.

This dataset presents the Cimex lectularius Official Gene Set (OGS) v1.1. The OGS is an integration of automatic gene predictions from MAKER (done by Dan Hughes at Baylor) with manual annotations by the research community (done via Web Apollo).

If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use

See all >>
FieldValue
Tags
Organism project
Cimex lectularius
i5k
insects
bed bug
Modified
2019-08-05
Release Date
2015-07-23
Identifier
2a233767-e3f4-4b23-8300-f4b4aadcc100
License
U.S. Public Domain
Contact Name
Benoit, Joshua B.
Contact Email
benoitja@UCMAIL.UC.EDU
Public Access Level
Public
Extended Metadata: 
FieldValue
Authors
Benoit, Joshua B.
(ORCID)
Dolan, Amanda
(Scopus Author ID)
Gondhalekar, Ameya D.
(ORCID)
Crumière, Antonin
(ORCID)
Rosendale, Andrew J.
(ORCID)
Khila, Abderrahman
(ORCID)
Hottel, Benjamin A.
(Scopus Author ID)
Peterson, Brittany
(ORCID)
Childers, Christopher
(ORCID)
Derst, Christian
(Scopus Author ID)
Lee, Chien-Yueh
(Scopus Author ID)
Schal, Coby
(ORCID)
Schorn, Corinna
(Scopus Author ID)
Wegener, Christian
(ORCID)
Zhao, Chaoyang
(ORCID)
Armisén, David
(ORCID)
Nelson, David R.
(ORCID)
Hughes, Daniel S.T.
(Scopus Author ID)
Duncan, Elizabeth J.
(ORCID)
Szuter, Elise M.
(Scopus Author ID)
Maiwald, Frank
(Scopus Author ID)
Attardo, Geoffrey M.
(ORCID)
Gujar, Hemant
(Scopus Author ID)
Lin, Han
(Scopus Author ID)
Robertson, Hugh M.
(ORCID)
Vargas Jentzsch, Iris M.
(ORCID)
Evans, Jay D.
(ORCID)
Werren, John H.
(ORCID)
Ribeiro, Jose M.C.
(ORCID)
Hendershot, Jacob M.
(Scopus Author ID)
Shukla, Jayendra N.
(ORCID)
Jones, Jeffery W.
(Scopus Author ID)
Zhou, Jing-Jiang
(Scopus Author ID)
Panfilio, Kristen A.
(ORCID)
Reinhardt, Klaus
(Scopus Author ID)
Raje, Kapil R.
(Scopus Author ID)
Santos, Maria Emilia
(Scopus Author ID)
Scharf, Michael E.
(Scopus Author ID)
Friedrich, Markus
(ORCID)
Mohan, M.
(Scopus Author ID)
Ott, Mark-Christoph
(Scopus Author ID)
Poelchau, Monica
(ORCID)
Weirauch, Matthew
(ORCID)
Peschel, Nicolai
(Scopus Author ID)
Mittapalli, Omprakash
(Scopus Author ID)
Menegazzi, Pamela
(ORCID)
Refki, Peter N.
(Scopus Author ID)
Johnston, Paul R.
(Scopus Author ID)
Nauen, Ralf
(ORCID)
Predel, Reinhard
(ORCID)
Hagan, Richard W.
(Scopus Author ID)
Ahn, Seung-Joon
(ORCID)
Palli, Subba R.
(ORCID)
Viala, Severine
(ORCID)
Wernig, Sebastian
(Scopus Author ID)
Resnik, Valentina
(Scopus Author ID)
Blenau, Wolfgang
(ORCID)
Adelman, Zach N.
(ORCID)
Richards, Stephen
(ORCID)
Peer Reviewed
No
Funding Sources
Biotechnology and Biological Sciences Research Council
Deutsche Forschungsgemeinschaft
European Research Council
National Institutes of Health
Royal Society of New Zealand
University of Cincinnati
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1196762
Product Type
Genome/Genetics Data
Related Content
Cimex lectularius Genome Assembly 1.0
Cimex lectularius Genome Annotations v0.5.3
Cimex lectularius i5k Workspace@NAL
FieldValue
OSTI Identifier
ISO Topic(s)
health
National Agricultural Library Thesaurus Term
genomics
Ag Data Commons Keywords
  • Genomics & Genetics
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
  • Genome
  • Genome annotation
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
Program
Insects 5K – i5K
Organism project
Cimex leticularis

Suggested Citation:

(dataset) Benoit, Joshua B.; Dolan, Amanda; Gondhalekar, Ameya D.; Crumière, Antonin; Rosendale, Andrew J. ; Khila, Abderrahman; Hottel, Benjamin A.; Peterson, Brittany; Childers, Christopher ; Derst, Christian; Lee, Chien-Yueh; Schal, Coby; Schorn, Corinna; Wegener, Christian; Zhao, Chaoyang; Armisén, David; Nelson, David R.; Hughes, Daniel S.T.; Duncan, Elizabeth J. ; Szuter, Elise M.; Maiwald, Frank; Attardo, Geoffrey M.; Gujar, Hemant; Lin, Han; Robertson, Hugh M.; Vargas Jentzsch, Iris M. ; Evans, Jay D.; Werren, John H.; Ribeiro, Jose M.C.; Hendershot, Jacob M.; Shukla, Jayendra N.; Jones, Jeffery W.; Zhou, Jing-Jiang; Panfilio, Kristen A.; Reinhardt, Klaus; Raje, Kapil R.; Santos, Maria Emilia; Scharf, Michael E.; Friedrich, Markus ; Mohan, M.; Ott, Mark-Christoph; Poelchau, Monica ; Weirauch, Matthew; Peschel, Nicolai; Mittapalli, Omprakash; Menegazzi, Pamela; Refki, Peter N.; Johnston, Paul R.; Nauen, Ralf; Predel, Reinhard; Hagan, Richard W.; Ahn, Seung-Joon; Palli, Subba R. ; Viala, Severine; Wernig, Sebastian; Resnik, Valentina; Blenau, Wolfgang; Adelman, Zach N.; Richards, Stephen. (2015). Cimex Lectularius Official Gene Set v1.1. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1196762. Accessed 2019-12-14.