Cimex Lectularius Official Gene Set v1.2

The Baylor College of Medicine recently sequenced and annotated the Cimex lectularius genome as part of the i5k pilot project. The C. lectularius research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2.

The bed bug, Cimex lectularius, is a model organism for understanding dermonecrotic envenomation (sphingomylinase D). A key focus of research to understand neurotic fractions in venom. The bed bug also provides appropriate phylogenetic sampling across diversity of order Araneae.

This dataset presents the Cimex lectularius Official Gene Set (OGS) v1.2. The OGS is an integration of automatic gene predictions from MAKER (done by Dan Hughes at Baylor) with manual annotations by the research community (done via Web Apollo).

Official Gene Sets OGSv1.1 and OGSv1.0 were never publicly released. Full datasets for OGSv1.2 and OGSv1.3 are additionally accessible at VEuPathDB: https://vectorbase.org/common/downloads/Legacy%20VectorBase%20Files/Cime...

If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use

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Cimex lectularius Official Gene Set OGS_v1.1 for genome assembly Cimex lectularius v1.0Data
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Field	Value
Tags	Organism project Cimex lectularius i5k Insects bed bug
Modified	2023-11-30
Release Date	2015-07-23
Identifier	2a233767-e3f4-4b23-8300-f4b4aadcc100
Spatial / Geographical Coverage Area	POLYGON ((-74.236547 41.14083, -73.902454 40.998429, -74.022947 40.708151, -74.187255 40.642428, -74.274886 40.489074, -74.001039 40.412397, -73.979131 40.297381, -74.099624 39.760641, -74.411809 39.360824, -74.614456 39.245808, -74.795195 38.993869, -74.888303 39.158177, -75.178581 39.240331, -75.534582 39.459409, -75.55649 39.607286, -75.561967 39.629194, -75.507197 39.683964, -75.414089 39.804456, -75.145719 39.88661, -75.129289 39.963288, -74.82258 40.127596, -74.773287 40.215227, -75.058088 40.417874, -75.069042 40.543843, -75.195012 40.576705, -75.205966 40.691721, -75.052611 40.866983, -75.134765 40.971045, -74.882826 41.179168, -74.828057 41.288707, -74.69661 41.359907, -74.236547 41.14083))
Publisher	Ag Data Commons
Spatial / Geographical Coverage Location	New Jersey
Temporal Coverage	February 21, 2014
License	U.S. Public Domain
Contact Name	Benoit, Joshua B.
Contact Email	benoitja@UCMAIL.UC.EDU
Public Access Level	Public

Extended Metadata:

Field	Value
Authors	Benoit, Joshua B. (ORCID) Dolan, Amanda (Scopus Author ID) Gondhalekar, Ameya D. (ORCID) Crumière, Antonin (ORCID) Rosendale, Andrew J. (ORCID) Khila, Abderrahman (ORCID) Hottel, Benjamin A. (Scopus Author ID) Peterson, Brittany (ORCID) Childers, Christopher (ORCID) Derst, Christian (Scopus Author ID) Lee, Chien-Yueh (Scopus Author ID) Schal, Coby (ORCID) Schorn, Corinna (Scopus Author ID) Wegener, Christian (ORCID) Zhao, Chaoyang (ORCID) Armisén, David (ORCID) Nelson, David R. (ORCID) Hughes, Daniel S.T. (Scopus Author ID) Duncan, Elizabeth J. (ORCID) Szuter, Elise M. (Scopus Author ID) Maiwald, Frank (Scopus Author ID) Attardo, Geoffrey M. (ORCID) Gujar, Hemant (Scopus Author ID) Lin, Han (Scopus Author ID) Robertson, Hugh M. (ORCID) Vargas Jentzsch, Iris M. (ORCID) Evans, Jay D. (ORCID) Werren, John H. (ORCID) Ribeiro, Jose M.C. (ORCID) Hendershot, Jacob M. (Scopus Author ID) Shukla, Jayendra N. (ORCID) Jones, Jeffery W. (Scopus Author ID) Zhou, Jing-Jiang (Scopus Author ID) Panfilio, Kristen A. (ORCID) Reinhardt, Klaus (Scopus Author ID) Raje, Kapil R. (Scopus Author ID) Santos, Maria Emilia (Scopus Author ID) Scharf, Michael E. (Scopus Author ID) Friedrich, Markus (ORCID) Mohan, M. (Scopus Author ID) Ott, Mark-Christoph (Scopus Author ID) Poelchau, Monica (ORCID) Weirauch, Matthew (ORCID) Peschel, Nicolai (Scopus Author ID) Mittapalli, Omprakash (Scopus Author ID) Menegazzi, Pamela (ORCID) Refki, Peter N. (Scopus Author ID) Johnston, Paul R. (Scopus Author ID) Nauen, Ralf (ORCID) Predel, Reinhard (ORCID) Hagan, Richard W. (Scopus Author ID) Ahn, Seung-Joon (ORCID) Palli, Subba R. (ORCID) Viala, Severine (ORCID) Wernig, Sebastian (Scopus Author ID) Resnik, Valentina (Scopus Author ID) Blenau, Wolfgang (ORCID) Adelman, Zach N. (ORCID) Richards, Stephen (ORCID)
Peer Reviewed	No
Funding Sources	Biotechnology and Biological Sciences Research Council Deutsche Forschungsgemeinschaft European Research Council National Institutes of Health Royal Society Te Apārangi University of Cincinnati
Dataset DOI (digital object identifier)	10.15482/USDA.ADC/1196762
Product Type	Dataset
Related Content	Cimex lectularius Genome Assembly 1.0 Cimex lectularius Genome Annotations v0.5.3 Cimex lectularius i5k Workspace@NAL
Preferred Dataset Citation	Benoit, Joshua B., et al. (2015). Cimex Lectularius Official Gene Set v1.2. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1196762

Field	Value
OSTI Identifier
ISO Topic(s)	health
National Agricultural Library Thesaurus Term	genomics
Ag Data Commons Keywords	Genomics & Genetics Genomics & Genetics Genome Genomics & Genetics Genome Genome annotation Genomics & Genetics Genome Genomics & Genetics
Program	Insects 5K – i5K Organism project Cimex leticularis

Ag Data Commons migration begins October 18, 2023

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