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Cimex Lectularius Official Gene Set v1.2

The Baylor College of Medicine recently sequenced and annotated the Cimex lectularius genome as part of the i5k pilot project. The C. lectularius research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2.

The bed bug, Cimex lectularius, is a model organism for understanding dermonecrotic envenomation (sphingomylinase D). A key focus of research to understand neurotic fractions in venom. The bed bug also provides appropriate phylogenetic sampling across diversity of order Araneae.

This dataset presents the Cimex lectularius Official Gene Set (OGS) v1.2. The OGS is an integration of automatic gene predictions from MAKER (done by Dan Hughes at Baylor) with manual annotations by the research community (done via Web Apollo).

Official Gene Sets OGSv1.1 and OGSv1.0 were never publicly released. Full datasets for OGSv1.2 and OGSv1.3 are additionally accessible at VEuPathDB: https://vectorbase.org/common/downloads/Legacy%20VectorBase%20Files/Cime...

If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use

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FieldValue
Tags
Organism project
Cimex lectularius
i5k
Insects
bed bug
Modified
2022-05-26
Release Date
2015-07-23
Identifier
2a233767-e3f4-4b23-8300-f4b4aadcc100
Spatial / Geographical Coverage Area
POLYGON ((-74.236547 41.14083, -73.902454 40.998429, -74.022947 40.708151, -74.187255 40.642428, -74.274886 40.489074, -74.001039 40.412397, -73.979131 40.297381, -74.099624 39.760641, -74.411809 39.360824, -74.614456 39.245808, -74.795195 38.993869, -74.888303 39.158177, -75.178581 39.240331, -75.534582 39.459409, -75.55649 39.607286, -75.561967 39.629194, -75.507197 39.683964, -75.414089 39.804456, -75.145719 39.88661, -75.129289 39.963288, -74.82258 40.127596, -74.773287 40.215227, -75.058088 40.417874, -75.069042 40.543843, -75.195012 40.576705, -75.205966 40.691721, -75.052611 40.866983, -75.134765 40.971045, -74.882826 41.179168, -74.828057 41.288707, -74.69661 41.359907, -74.236547 41.14083))
Publisher
Ag Data Commons
Spatial / Geographical Coverage Location
New Jersey
Temporal Coverage
February 21, 2014
License
U.S. Public Domain
Contact Name
Benoit, Joshua B.
Contact Email
benoitja@UCMAIL.UC.EDU
Public Access Level
Public
Extended Metadata: 
FieldValue
Authors
Benoit, Joshua B. (ORCID)
Dolan, Amanda (Scopus Author ID)
Gondhalekar, Ameya D. (ORCID)
Crumière, Antonin (ORCID)
Rosendale, Andrew J. (ORCID)
Khila, Abderrahman (ORCID)
Hottel, Benjamin A. (Scopus Author ID)
Peterson, Brittany (ORCID)
Childers, Christopher (ORCID)
Derst, Christian (Scopus Author ID)
Lee, Chien-Yueh (Scopus Author ID)
Schal, Coby (ORCID)
Schorn, Corinna (Scopus Author ID)
Wegener, Christian (ORCID)
Zhao, Chaoyang (ORCID)
Armisén, David (ORCID)
Nelson, David R. (ORCID)
Hughes, Daniel S.T. (Scopus Author ID)
Duncan, Elizabeth J. (ORCID)
Szuter, Elise M. (Scopus Author ID)
Maiwald, Frank (Scopus Author ID)
Attardo, Geoffrey M. (ORCID)
Gujar, Hemant (Scopus Author ID)
Lin, Han (Scopus Author ID)
Robertson, Hugh M. (ORCID)
Vargas Jentzsch, Iris M. (ORCID)
Evans, Jay D. (ORCID)
Werren, John H. (ORCID)
Ribeiro, Jose M.C. (ORCID)
Hendershot, Jacob M. (Scopus Author ID)
Shukla, Jayendra N. (ORCID)
Jones, Jeffery W. (Scopus Author ID)
Zhou, Jing-Jiang (Scopus Author ID)
Panfilio, Kristen A. (ORCID)
Reinhardt, Klaus (Scopus Author ID)
Raje, Kapil R. (Scopus Author ID)
Santos, Maria Emilia (Scopus Author ID)
Scharf, Michael E. (Scopus Author ID)
Friedrich, Markus (ORCID)
Mohan, M. (Scopus Author ID)
Ott, Mark-Christoph (Scopus Author ID)
Poelchau, Monica (ORCID)
Weirauch, Matthew (ORCID)
Peschel, Nicolai (Scopus Author ID)
Mittapalli, Omprakash (Scopus Author ID)
Menegazzi, Pamela (ORCID)
Refki, Peter N. (Scopus Author ID)
Johnston, Paul R. (Scopus Author ID)
Nauen, Ralf (ORCID)
Predel, Reinhard (ORCID)
Hagan, Richard W. (Scopus Author ID)
Ahn, Seung-Joon (ORCID)
Palli, Subba R. (ORCID)
Viala, Severine (ORCID)
Wernig, Sebastian (Scopus Author ID)
Resnik, Valentina (Scopus Author ID)
Blenau, Wolfgang (ORCID)
Adelman, Zach N. (ORCID)
Richards, Stephen (ORCID)
Peer Reviewed
No
Funding Sources
Biotechnology and Biological Sciences Research Council
Deutsche Forschungsgemeinschaft
European Research Council
National Institutes of Health
Royal Society Te Apārangi
University of Cincinnati
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1196762
Product Type
Dataset
Related Content
Cimex lectularius Genome Assembly 1.0
Cimex lectularius Genome Annotations v0.5.3
Cimex lectularius i5k Workspace@NAL
FieldValue
OSTI Identifier
ISO Topic(s)
health
National Agricultural Library Thesaurus Term
genomics
Ag Data Commons Keywords
  • Genomics & Genetics
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
  • Genome
  • Genome annotation
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
Program
Insects 5K – i5K
Organism project
Cimex leticularis

Suggested Citation:

(dataset) Benoit, Joshua B.; Dolan, Amanda; Gondhalekar, Ameya D.; Crumière, Antonin; Rosendale, Andrew J.; Khila, Abderrahman; Hottel, Benjamin A.; Peterson, Brittany; Childers, Christopher; Derst, Christian; Lee, Chien-Yueh; Schal, Coby; Schorn, Corinna; Wegener, Christian; Zhao, Chaoyang; Armisén, David; Nelson, David R.; Hughes, Daniel S.T.; Duncan, Elizabeth J.; Szuter, Elise M.; Maiwald, Frank; Attardo, Geoffrey M.; Gujar, Hemant; Lin, Han; Robertson, Hugh M.; Vargas Jentzsch, Iris M.; Evans, Jay D.; Werren, John H.; Ribeiro, Jose M.C.; Hendershot, Jacob M.; Shukla, Jayendra N.; Jones, Jeffery W.; Zhou, Jing-Jiang; Panfilio, Kristen A.; Reinhardt, Klaus; Raje, Kapil R.; Santos, Maria Emilia; Scharf, Michael E.; Friedrich, Markus; Mohan, M.; Ott, Mark-Christoph; Poelchau, Monica; Weirauch, Matthew; Peschel, Nicolai; Mittapalli, Omprakash; Menegazzi, Pamela; Refki, Peter N.; Johnston, Paul R.; Nauen, Ralf; Predel, Reinhard; Hagan, Richard W.; Ahn, Seung-Joon; Palli, Subba R.; Viala, Severine; Wernig, Sebastian; Resnik, Valentina; Blenau, Wolfgang; Adelman, Zach N.; Richards, Stephen (2015). Cimex Lectularius Official Gene Set v1.2. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1196762. Accessed 2023-06-01.