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CottonGen BLAST
CottonGen offers BLAST with genome, transcriptome, peptide and marker sequence databases from Gossypium species. This can be done using nucleotide sequences or peptide sequences. BLAST functionality is similar to that on NCBI.
BLAST Programs:
- blastn: Search a nucleotide database using a nucleotide query.
- blastx: Search protein database using a translated nucleotide query.
- tblastn: Search translated nucleotide database using a protein query.
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blastp: Search protein database using a protein query.
Resources in this dataset:Resource Title: Website Pointer for CottonGen BLAST Search.
File Name: Web Page, url: https://www.cottongen.org/blast
CottonGen offers BLAST with genome, transcriptome, peptide and marker sequence databases from *Gossypium* species. This can be done using nucleotide sequences or peptide sequences. BLAST functionality is similar to that on NCBI. Enter or upload FASTA sequence(s) to query and select BLAST database.
BLAST Programs:
- blastn: Search a nucleotide database using a nucleotide query.
- blastx: Search protein database using a translated nucleotide query.
- tblastn: Search translated nucleotide database using a protein query.
- blastp: Search protein database using a protein query.
Funding
Cotton Incorporated
USDA-ARS: Crop Germplasm Research Unit, College Station, TX
Bayer CropScience
Dow Chemical Company
Monsanto Company
Washington State University
USDA-NIFA: 2009-51181-06036
USDA-NIFA: 2009-51181-05808
History
Data contact name
Main, DorrieData contact email
dorrie@wsu.eduPublisher
MainLab, Washington State UniversityIntended use
CottonGen offers BLAST with genome, transcriptome, peptide and marker sequence databases from Gossypium species.Theme
- Not specified
ISO Topic Category
- biota
- farming
National Agricultural Library Thesaurus terms
Internet; databases; genomics; breeding; translation (genetics); applied research; cotton; infrastructure; quantitative trait loci; pathogens; germplasm conservation; pedigree; unigenes; expressed sequence tags; loci; taxonomy; germplasm; Gossypium; genetic markers; publications; genetic databases; plant breeding; plant genetics; computer software; genotype; genome; transcriptome; nucleotide sequences; Biological Sciences; Plant Science and Plant ProductsOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
ARS National Program Number
- 301
Pending citation
- No
Public Access Level
- Public