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CottonGen Breeding Information Management System (BIMS)

dataset
posted on 2024-02-13, 13:43 authored by Taein Lee, Sook Jung, Ksenija Gasic, Todd Campbell, Jing Yu, Jodi Humann, Heidi Hough, Dorrie Main

BIMS, the Breeding Information Management System, is a secure and comprehensive online breeding management system developed for the generic Tripal Database Platform which allows breeders to store, manage, archive and analyze their private breeding program. Breeders can load data in templates provided as well as output from the Field Book App, an android app for collecting phenotype data. In addition to the private breeders BIMS, users without accounts can also view the publicly available breeding data. The fully developed version will allow users to:

  • Fully integrate their data with publicly available genomic, genetic and breeding data in the community database.

  • Utilize their integrated pedigree, phenotype and genotype data in performing genomic analysis and making breeding decisions.

  • Use open-source new genomics tool and breeding decision tools with seamless access to HPC.


    Resources in this dataset:

    • Resource Title: Website Pointer for CottonGen BIMS (Breeding Information Management System).

      File Name: Web Page, url: https://www.cottongen.org/bims

      BIMS, the Breeding Information Management System, is a secure and comprehensive online breeding management system developed for the generic Tripal Database Platform which allows breeders to store, manage, archive and analyze their private breeding program. Breeders can load data in templates provided as well as output from the Field Book App, an android app for collecting phenotype data. In addition to the private breeders BIMS users without accounts can also view the publicly available breeding data. The fully developed version will allow users to:

    • Fully integrate their data with publicly available genomic, genetic and breeding data in the community database

    • Utilize their integrated pedigree, phenotype and genotype data in performing genomic analysis and making breeding decisions.

    • Use open-source new genomics tool and breeding decision tools with seamless access to HPC.

Funding

Cotton Incorporated

USDA-ARS: Crop Germplasm Research Unit, College Station, TX

Bayer CropScience

Dow Chemical Company: Phytogen

Monsanto Company

Washington State University

USDA-NIFA: 2009-51181-06036

USDA-NIFA: 2009-51181-05808

History

Data contact name

Main, Dorrie

Data contact email

dorrie@wsu.edu

Publisher

MainLab, Washington State University

Intended use

To provide a secure and comprehensive online breeding management system developed for the generic Tripal Database Platform which allows breeders to store, manage, archive and analyze their private breeding program.

Theme

  • Not specified

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

Internet; databases; genomics; breeding; translation (genetics); applied research; cotton; infrastructure; quantitative trait loci; pathogens; germplasm conservation; pedigree; unigenes; expressed sequence tags; loci; taxonomy; germplasm; Gossypium raimondii; genetic markers; publications; genetic databases; plant breeding; plant genetics; computer software; genotype

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 301

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Lee, Taein; Jung, Sook; Gasic, Ksenija; Campbell, Todd; Yu, Jing; Humann, Jodi; Hough, Heidi; Main, Dorrie (2019). CottonGen Breeding Information Management System (BIMS). MainLab, Washington State University.

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