CottonGen CottonCyc Pathways Database

The CottonGen CottonCyc Pathways Database, part of CottonGen, supports searching and browsing the following CottonCyc databases:

Cyc pathways for JGI v2.0 G. raimondii D5 genome assembly

This Cyc database was constructed using PathwayTools version 20.0 using the gene models from the JGI v2.0 D5 genome assembly of Gossypium raimondii. There has been no manual curation of this Cyc database. Pathway predictions were made using PathwayTools and in-silico v2.1 annotations as provided by JGI.

Cyc pathways for CGP-BGI v1.0 G. hirsutum AD1 genome assembly

This Cyc database was constructed using PathwayTools version 20.0 using the gene models from the CGP-BGI v1.0 AD1 genome assembly of Gossypium hirsutum. There has been no manual curation of this Cyc database. Pathway predictions were made using PathwayTools and in-silico v1.0 annotations as provided by CGP-BGI.

Search parameters include genes, proteins, RNAs, compounds, reactions, pathways, growth media, and BLAST search.

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Website Pointer to CottonGen CottonCyc Pathways Databasehtml
Explore Data

Field	Value
Tags	CottonGen CottonDB Cotton Marker Database Tripal database GBrowse CMap NCBI BLAST np301
Parent Record	CottonGen: Cotton Database Resources
Modified	2019-08-23
Release Date	2019-08-15
Identifier	d88235f1-9a2f-4f1f-b07d-4522c723472c
Publisher	MainLab, Washington State University
License	U.S. Public Domain
Contact Name	Main, Dorrie
Contact Email	dorrie@wsu.edu
Public Access Level	Public
Program Code	005:040 - Department of Agriculture - National Research
Bureau Code	005:18 - Agricultural Research Service

Extended Metadata:

Field	Value
Authors	Lee, Taein (ORCID) Jung, Sook (Scopus Author ID) Gasic, Ksenija (ORCID) Campbell, Todd (ORCID) Yu, Jing (Scopus Author ID) Humann, Jodi (ORCID) Hough, Heidi (Scopus Author ID) Main, Dorrie (ORCID)
Peer Reviewed	No
Intended Use
Equipment or Software Used	Pathway Tools
Funding Sources	Cotton Incorporated Agricultural Research Service Crop Germplasm Research Unit, College Station, TX Bayer CropScience Dow Chemical Company Phytogen Monsanto Company Washington State University National Institute of Food and Agriculture 2009-51181-06036 National Institute of Food and Agriculture 2009-51181-05808
Primary Article
Product Type	Dataset

Field	Value
ISO Topic(s)	biota
National Agricultural Library Thesaurus Term	Internet databases genomics breeding translation (genetics) applied research cotton infrastructure quantitative trait loci pathogens germplasm conservation pedigree unigenes expressed sequence tags loci taxonomy germplasm Gossypium raimondii genetic markers publications genetic databases plant breeding plant genetics computer software genotype
Ag Data Commons Keywords	Plants & Crops Traits Genomics & Genetics Online database Plants & Crops

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