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CottonGen Map Viewer

dataset
posted on 2024-02-13, 13:45 authored by Taein Lee, Sook Jung, Ksenija Gasic, Todd Campbell, Jing Yu, Jodi Humann, Heidi Hough, Dorrie Main

MapViewer is a graphical tool for viewing and comparing Gossypium spp. genetic maps. It includes dynamically scrollable maps, correspondence matrices, dot plots, links to details about map features, and exporting functionality. It was developed by the MainLab at Washington State University and is available for download for use in other Tripal databases. The query interface allows the user to select Species, Map, and Linkage Group options. Help information includes a video tutorial, user manual, and sample map, correspondence matrix, dot plot, and exported figures.


Resources in this dataset:

  • Resource Title: Website Pointer for CottonGen Map Viewer.

    File Name: Web Page, url: https://www.cottongen.org/MapViewer

    MapViewer is a graphical tool for viewing and comparing *Gossypium* spp. genetic maps. It includes dynamically scrollable maps, correspondence matrices, dot plots, links to details about map features, and exporting functionality. It was developed by the MainLab at Washington State University and is available for download for use in other Tripal databases. The query interface allows the user to select Species, Map, and Linkage Group options. Help information includes a video tutorial, user manual, and sample map, correspondence matrix, dot plot, and exported figures.

Funding

Cotton Incorporated

USDA-ARS: Crop Germplasm Research Unit, College Station, TX

Bayer CropScience

Dow Chemical Company

Monsanto Company

Washington State University

USDA-NIFA: 2009-51181-06036

USDA-NIFA: 2009-51181-05808

History

Data contact name

Main, Dorrie

Data contact email

dorrie@wsu.edu

Publisher

MainLab, Washington State University

Intended use

MapViewer is a graphical tool for viewing and comparing Gossypium spp genetic maps.

Theme

  • Not specified

ISO Topic Category

  • biota
  • farming

National Agricultural Library Thesaurus terms

Internet; databases; genomics; breeding; translation (genetics); applied research; cotton; infrastructure; quantitative trait loci; pathogens; germplasm conservation; pedigree; unigenes; expressed sequence tags; loci; taxonomy; germplasm; Gossypium; genetic markers; publications; genetic databases; plant breeding; plant genetics; computer software; genotype; genome; transcriptome; nucleotide sequences; genetic maps

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 301

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Lee, Taein; Jung, Sook; Gasic, Ksenija; Campbell, Todd; Yu, Jing; Humann, Jodi; Hough, Heidi; Main, Dorrie (2019). CottonGen Map Viewer. MainLab, Washington State University.

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