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CottonGen Sequence Retrieval
Sequence Retrieval allows users to download nucleotide and protein sequences including chromosomes, scaffolds, genes, mRNAs, transcript coding sequences, protein, reftrans contigs and unigene contigs. For the sequences aligned to larger sequences, such as genes, mRNAs and transcript coding sequences, a numeric value specifying the number of upstream bases and downstream bases can be entered. A video and text tutorial are provided for additional help information.
Resources in this dataset:
Resource Title: Website Pointer for Cottongen Sequence Retrieval.
File Name: Web Page, url: https://www.cottongen.org/retrieve/sequences
Sequence Retrieval allows users to download nucleotide and protein sequences including chromosomes, scaffolds, genes, mRNAs, transcript coding sequences, protein, reftrans contigs and unigene contigs. For the sequences aligned to larger sequences, such as genes, mRNAs and transcript coding sequences, a numeric value specifying the number of upstream bases and downstream bases can be entered. A video and text tutorial are provided for additional help information.
Available Datasets:
- Gossypioides kirkii genome ISU Assembly v1.0 & Annotation v1.0
- Gossypium arboreum (A2) Genome BGI Assembly v2.0 & Annotation v1.0
- Gossypium arboreum (A2) genome CRI-Updated Assembly v1.0 & Annotation v1.0
- Gossypium arboreum CottonGen RefTrans V1
- Gossypium barbadense (AD2) Genome HAU Assembly v2.0 & Annotation v1.0
- Gossypium barbadense (AD2) Genome HAU-SGI Assembly v1.0 & Annotation v1.0
- Gossypium barbadense (AD2) Hai7124 genome ZJU Assembly v1.1 & Annotation a1
- Gossypium barbadense CottonGen RefTrans V1
- Gossypium hirsutum (AD1) Genome CGP-BGI Assembly v1.0 & Annotation v1.0
- Gossypium hirsutum (AD1) Genome HAU Assembly v1.0 & Annotation a1.0 / v1.1 a1.1
- Gossypium hirsutum (AD1) Genome NAU-NBI Assembly v1.1 & Annotation v1.1
- Gossypium hirsutum (AD1) Genome - Texas Interim release UTX-JGI v1.1
- Gossypium hirsutum (AD1) genome ZJU-Improved Assembly v2.1 & Annotation a1.0
- Gossypium hirsutum CottonGen RefTrans V1
- Gossypium raimondii CottonGen RefTrans V1
- Gossypium raimondii (D5) Draft Genome BGI-CGP v1.0 Assembly & Annotation
- Gossypium raimondii (D5) genome BYU Assembly v1 & Annotation a1
- Gossypium raimondii (D5) genome JGI assembly v2.0 (annot v2.1)
- Gossypium thurberi (D1) Genome ISU Assembly v1.0
- Gossypium turneri (D10) genome BYU Assembly v1 & Annotation a2
Funding
Cotton Incorporated
USDA-ARS: Crop Germplasm Research Unit, College Station, TX
Bayer CropScience
Dow Chemical Company
Monsanto Company
Washington State University
USDA-NIFA: 2009-51181-06036
USDA-NIFA: 2009-51181-05808
History
Data contact name
Main, DorrieData contact email
dorrie@wsu.eduPublisher
MainLab, Washington State UniversityIntended use
Sequence Retrieval allows users to download Gossypium spp nucleotide and protein sequences including chromosomes, scaffolds, genes, mRNAs, transcript coding sequences, protein, reftrans contigs and unigene contigs.Theme
- Not specified
ISO Topic Category
- biota
- farming
National Agricultural Library Thesaurus terms
Internet; databases; genomics; breeding; translation (genetics); applied research; cotton; infrastructure; quantitative trait loci; pathogens; germplasm conservation; pedigree; unigenes; expressed sequence tags; loci; taxonomy; germplasm; Gossypium; genetic markers; publications; genetic databases; plant breeding; plant genetics; computer software; genotype; genome; transcriptome; nucleotide sequences; amino acid sequences; chromosomes; messenger RNAOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
ARS National Program Number
- 301
Pending citation
- No
Public Access Level
- Public