Data from: Characterization of Levilactobacillus brevis genotypes and phenotypes from industrial cucumber fermentation identifies the presence of 1,2-propanediol metabolosomes in the species

Data collected from Phenotypic Microarray (PM) plates PM01 and PM02, using an Omnilog system for the characterization of four species of Levilactobacillus brevis autochthonous to commercial cucumber fermentations and two ATCC reference strains, ATCC14869 and ATCC367. Each PM plate was duplicated for each isolate and the cells were prepared as suggested by the manufacturer. Omnilog data is the result of a screening and phenotypes should be confirmed using conditions that mimic the habitat of interest. This dataset was generated for scientific research purpose only. The Levilactobacillus brevis isolates included in this dataset have publicly available genome sequences described in the Microbiology Resource Announcement peer reviewed journal.

Resources in this dataset:

Resource Title: Data for PM01 and PM02 for Levilactobacillus brevis autochthonous to cucumber fermentation and two reference strains
File Name: Ag Data Commons Levilactobacillus brevis PM01 & PM02.xlsx
Description: This is an Microsoft Excel file with two tabs, one for the PM01 plates and the second for the PM02 plates. Date corresponds to four Levilactobacillus brevis isolates that originated from commercial cucumber fermentations and two ATCC reference strains. All plates were ran in duplicates.

See all >>

Data for PM01 and PM02 for Levilactobacillus brevis autochthonous to cucumber fermentation and two reference strainsxlsx
This is an Microsoft Excel file with two tabs, one for the PM01 plates and...
MD5:
Explore Data 1.44 MB
Download All

Field	Value
Tags	Levilactobacillus brevis Omnilog cucumber fermentation phenotyping phenotypic microarray sugar utilization NP306
Modified	2023-08-08
Release Date	2023-03-17
Frequency	Irregularly
Identifier	9e0466a1-4e36-4529-9c68-3ed003f938e9
Spatial / Geographical Coverage Area	POINT (-78.060020506382 35.205416141462) POINT (-93.576897382736 44.801565914694)
Publisher	Ag Data Commons
Spatial / Geographical Coverage Location	Chaska, Minnesota, USA and Mt. Olive, North Carolina, USA
Temporal Coverage	April 1, 2009 to October 31, 2010
License	U.S. Public Domain
Contact Name	Perez-Diaz, Ilenys
Contact Email	ilenys.perez-diaz@usda.gov
Public Access Level	Public
Program Code	005:040 - Department of Agriculture - National Research
Bureau Code	005:18 - Agricultural Research Service

Extended Metadata:

Field	Value
Authors	Page, Clinton A. (ORCID)
Peer Reviewed	No
Intended Use	The dataset was generated to understand the carbon utilization ability of Levilactobacillus brevis intrinsic to commercial cucumber fermentations.
Use Limitations	The Omnilog data results from a screening design and should be confirm under conditions that mimic a habitat of interest.
Funding Sources	Agricultural Research Service 6070-41000-008-00D
Primary Article	Pérez-Díaz, I. M., Page, C. A., Mendez-Sandoval, L., & Johanningsmeier, S. D. (2023). Levilactobacillus brevis, autochthonous to cucumber fermentation, is unable to utilize citric acid and encodes for a putative 1,2-propanediol utilization microcompartment. Frontiers in Microbiology, 14. https://doi.org/10.3389/fmicb.2023.1210190
Related Articles	Page, C. A., Carter-Ogden, R. A., Lee, A. M., & Pérez-Díaz, I. M. (2022). Genome Sequences for Levilactobacillus brevis Autochthonous to Commercial Cucumber Fermentations. Microbiology Resource Announcements, 11(5). https://doi.org/10.1128/mra.00029-22
Dataset DOI (digital object identifier)	10.15482/USDA.ADC/1528683

Field	Value
ARIS Log Number	298524
OSTI Identifier
ISO Topic(s)	biota environment
State or Territory	Minnesota North Carolina
National Agricultural Library Thesaurus Term	phenotype cucumbers fermentation nucleotide sequences microbiology sugars carbon
Ag Data Commons Keywords	Genomics & Genetics Phenotypes Genomics & Genetics Food & Nutrition

License

Other Access

Data Extent