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Data from: Clarireedia: A new fungal genus comprising four pathogenic species responsible for dollar spot disease of turfgrass

dataset
posted on 2024-02-08, 20:57 authored by Catalina Salgado-Salazar, Lisa Beirn, Bruce B. Clarke, Jo Anne Crouch

Dollar spot is one of the most destructive globally distributed diseases of turfgrass. The identity of the fungus responsible for the disease has been the subject of debate for more than 75 years. These datasets provide the phylogenetic evidence from three nucleotide sequence markers (CaM, ITS and Mcm7) that underlie the establishment of the new fungal genus Clarireedia, which includes four species that cause turfgrass dollar spot disease: Clarireedia homoeocarpa, C. bennettii, C. jacksonii, and C. monteithiana. Datasets include the DNA sequence alignments for the CaM, ITS and Mcm7 markers for exemplar Clarireedia isolates, and the complete combined phylogenetic dataset and phylogenetic tree file.


Resources in this dataset:

  • Resource Title: DNA sequence alignment, combined dataset.

    File Name: Allgenes_alignment.txt


  • Resource Title: Phylogenetic tree file.

    File Name: Allgenes_phylogenyMrBayes.nex.con.tre.txt

    Resource Description: Derived from analysis of DNA sequence alignment


  • Resource Title: DNA sequence alignment of CaM marker for dollar spot fungi exemplars.

    File Name: CaM_DS_diagnostic sites.txt


  • Resource Title: DNA sequence alignment of ITS marker for dollar spot fungi exemplars.

    File Name: ITS_DS_diagnostic sites.txt


  • Resource Title: DNA sequence alignment of Mcm7 marker for dollar spot fungi exemplars.

    File Name: Mcm7_DS_diagnostic sites.txt

Funding

USDA-ARS: 8042-22000-298-00-D

History

Data contact name

Crouch, Jo Anne

Data contact email

joanne.crouch@ars.usda.gov

Publisher

Ag Data Commons

Intended use

These datasets can be used as as reference barcodes to identify dollar spot fungi to the species level.

Theme

  • Not specified

Geographic location - description

worldwide

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

fungi; turf grasses; data collection; barcoding; phylogeny; nucleotide sequences; internal transcribed spacers; DNA; sequence alignment; plant pathogenic fungi; plant pathogens; pest identification; species identification; pathogen identification; Ascomycota; Leotiomycetes; Rutstroemia; Sclerotinia

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 303

Primary article PubAg Handle

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Salgado-Salazar, Catalina; Beirn, Lisa; Clarke, Bruce B.; Crouch, Jo Anne (2018). Data from: Clarireedia: A new fungal genus comprising four pathogenic species responsible for dollar spot disease of turfgrass. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1429061