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Data from: Data on xylem sap proteins from Mn- and Fe-deficient tomato plants obtained using shotgun proteomics

This article contains consolidated proteomic data obtained from xylem sap collected from tomato plants grown in Fe- and Mn-sufficient control, as well as Fe-deficient and Mn-deficient conditions. Data presented here cover proteins identified and quantified by shotgun proteomics and Progenesis LC-MS analyses: proteins identified with at least two peptides and showing changes statistically significant (ANOVA; p ≤ 0.05) and above a biologically relevant selected threshold (fold ≥ 2) between treatments are listed. The comparison between Fe-deficient, Mn-deficient and control xylem sap samples using a multivariate statistical data analysis (Principal Component Analysis, PCA) is also included. Data included in this article are discussed in depth in "Effects of Fe and Mn deficiencies on the protein profiles of tomato (Solanum lycopersicum) xylem sap as revealed by shotgun analyses", Ceballos-Laita et al., J. Proteomics, 2018. This dataset is made available to support the cited study as well to extend analyses at a later stage.

Dataset Info

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FieldValue
Authors
Ceballos-Laita, Laura
(ORCID)
Gutierrez-Carbonell, Elain
Takahashi, Daisuke
Abadía, Anunciación
Uemura, Matsuo
(ORCID)
Abadía, Javier
(ORCID)
López-Millán, Ana Flor
Product Type
Dataset
Intended Use
To provide data on the protein composition of this fluid and facilitating comparisons with other plant species and different plant stresses. Statistically significant and biologically relevant changes in the xylem sap protein composition upon Fe and Mn deficiencies provide information to assess the effects of these nutritional deficiencies on the metabolic pathways of tomato plants growing in controlled environmental conditions, and results could be compared to those found in other nutritional constraints. Data allow researchers to assess the companion paper, extend analyses at a later stage, and facilitate the study of target proteins in tomato xylem sap.
Publisher
Data in Brief
Contact Name
López-Millán, Ana Flor
Contact Email
Public Access Level
Public
Preferred Dataset Citation
Ceballos-Laita, L., Gutierrez-Carbonell, E., Takahashi, D., Abadía, A., Uemura, M., Abadía, J., & López-Millán, A. F. (2018). Data on xylem sap proteins from Mn- and Fe-deficient tomato plants obtained using shotgun proteomics. <em>Data in Brief</em>. https://10.1016/j.dib.2018.01.034.
Primary Article

Ceballos-Laita, L., Gutierrez-Carbonell, E., Takahashi, D., Abadía, A., Uemura, M., Abadía, J., & López-Millán, A. F. (2018). Data on xylem sap proteins from Mn- and Fe-deficient tomato plants obtained using shotgun proteomics. Data in Brief, 17: 512-516.

Related Article

Ceballos-Laita, L., Gutierrez-Carbonell, E., Takahashi, D., Abadía, A., Uemura, M., Abadía, J., & López-Millán, A. F. (2018). Effects of Fe and Mn deficiencies on the protein profiles of tomato (Solanum lycopersicum) xylem sap as revealed by shotgun analyses. Journal of Proteomics, 170:117-129.

Methods Citation

Ceballos-Laita, L., Gutierrez-Carbonell, E., Takahashi, D., Abadía, A., Uemura, M., Abadía, J., & López-Millán, A. F. (2018). Data on xylem sap proteins from Mn- and Fe-deficient tomato plants obtained using shotgun proteomics. Data in Brief, 17: 512-516.

License
Funding Source(s)
Agricultural Research Service
Dataset DOI (digital object identifier)
10.1016/j.dib.2018.01.034
Program Code
005:037 - Department of Agriculture - Research and Education
Bureau Code
005:18 - Agricultural Research Service
Modified Date
2019-05-17
Release Date
2018-02-05
Ag Data Commons Keywords: 
  • Plants & Crops
  • Traits
  • Plants & Crops
  • Plant health
  • Plants & Crops
  • Genomics & Genetics
  • Proteomes
ISO Topic(s):