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Data from: Draft genome of the rice coral Montipora capitata obtained from linked-read sequencing

Gene models for protein-coding genes in the genome of the rice coral Montipora capitata, Hawaii Island. Annotation was performed with Augustus v3.3.1, using RNA-seq data as extrinsic evidence. Gene structures (.gff), coding sequences (_cds.fas), and amino acid sequences (_aa.fas) are provided.

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FieldValue
Tags
coral
genome assembly
gene annotation
Montipora capitata
Hawaii
gene models
linked-read sequencing
Modified
2019-08-05
Release Date
2019-06-19
Identifier
9f252cb3-24ce-4e2e-8152-5291279221cc
Publisher
Ag Data Commons
Spatial / Geographical Coverage Location
Waiopae, Hawaii Island
License
U.S. Public Domain
Contact Name
Helmkampf, Martin
Contact Email
mhelmkam@hawaii.edu
Public Access Level
Public
Extended Metadata: 
FieldValue
Authors
Helmkampf, Martin (ORCID)
Bellinger, M. Renee (ORCID)
Geib, Scott M. (ORCID)
Sim, Sheina B. (ORCID)
Takabayashi, Misaki (ORCID)
Peer Reviewed
No
Equipment or Software Used
Augustus v3.3.1
Funding Sources
National Science Foundation
EPS-0903833
National Science Foundation
0833211
National Science Foundation
1345247
Agricultural Research Service
2040-22430-026-00-D
Primary Article

Helmkampf, M., Bellinger, M. R., Geib, S. M., Sim, S. B., & Takabayashi, M. (2019). Draft genome of the rice coral Montipora capitata obtained from linked-read sequencing. Genome Biology and Evolution. https://doi.org/10.1093/gbe/evz135
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1503958
Product Type
Dataset
Related Content
Data from: Draft genome of the rice coral Montipora capitata obtained from linked-read sequencing
FieldValue
OSTI Identifier
ISO Topic(s)
biota
State or Territory
Hawaii
National Agricultural Library Thesaurus Term
corals
models
genes
sequence analysis
amino acid sequences
genome assembly
Hawaii
Ag Data Commons Keywords
  • Genomics & Genetics
  • Expression analysis
  • RNA Seq
  • Genomics & Genetics
  • Expression analysis
  • Genomics & Genetics

Suggested Citations:

(original article) Helmkampf, M., Bellinger, M. R., Geib, S. M., Sim, S. B., & Takabayashi, M. (2019). Draft genome of the rice coral Montipora capitata obtained from linked-read sequencing. Genome Biology and Evolution. https://doi.org/10.1093/gbe/evz135

(dataset) Helmkampf, Martin; Bellinger, M. Renee; Geib, Scott M.; Sim, Sheina B.; Takabayashi, Misaki (2019). Data from: Draft genome of the rice coral Montipora capitata obtained from linked-read sequencing. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1503958. Accessed 2023-06-06.