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Data from: Draft genome of the rice coral Montipora capitata obtained from linked-read sequencing

dataset
posted on 2024-02-13, 13:43 authored by Martin Helmkampf, M. Renee Bellinger, Scott M. Geib, Sheina B. Sim, Misaki Takabayashi

Gene models for protein-coding genes in the genome of the rice coral Montipora capitata, Hawaii Island. Annotation was performed with Augustus v3.3.1, using RNA-seq data as extrinsic evidence. Gene structures (.gff), coding sequences (_cds.fas), and amino acid sequences (_aa.fas) are provided.


Resources in this dataset:

  • Resource Title: Montipora capitata gene models v1.1, amino acid sequence.

    File Name: Mcap_genemodels_1.1_aa.fas


  • Resource Title: Montipora capitata gene models v1.1, gene structure (GFF).

    File Name: Mcap_genemodels_1.1.gff


  • Resource Title: Montipora capitata gene models v1.1, coding sequence.

    File Name: Mcap_genemodels_1.1_cds.fas

Funding

National Science Foundation: EPS-0903833

National Science Foundation: 0833211

National Science Foundation: 1345247

USDA-ARS: 2040-22430-026-00-D

History

Data contact name

Helmkampf, Martin

Data contact email

mhelmkam@hawaii.edu

Publisher

Ag Data Commons

Theme

  • Not specified

Geographic location - description

Waiopae, Hawaii Island

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

corals; models; genes; sequence analysis; amino acid sequences; genome assembly; Hawaii

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Helmkampf, Martin; Bellinger, M. Renee; Geib, Scott M.; Sim, Sheina B.; Takabayashi, Misaki (2019). Data from: Draft genome of the rice coral Montipora capitata obtained from linked-read sequencing. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1503958

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