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Data from: Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.)

Loblolly pine (Pinus taeda L.) is one of the most widely planted and commercially important forest tree species in the USA and worldwide, and is an object of intense genomic research. However, whole genome resequencing in loblolly pine is hampered by its large size and complexity and a lack of a good reference. As a valid and more feasible alternative, entire exome sequencing was hence employed to identify the gene-associated single nucleotide polymorphisms (SNPs) and to genotype the sampled trees.

Dataset Info

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FieldValue
Authors
Lu, Mengmeng
Krutovsky, Konstantin V.
(ORCID)
Nelson, C. Dana
(ORCID)
Koralewski, Tomasz E.
Byram, Thomas D.
Loopstra, Carol A.
(ORCID)
Product Type
Dataset
Publisher
NCBI
Contact Name
Loopstra, Carol
Contact Email
Public Access Level
Public
Primary Article

Lu, M., Krutovsky, K., Nelson, C., Koralewski, T., Byram, T., & Loopstra, C. (2016). Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.). BMC Genomics, 17(1).

License
Funding Source(s)
National Institute of Food and Agriculture
2011-68002-30185
Modified Date
2019-02-03
Release Date
2018-05-14
Ag Data Commons Keywords: 
  • Genomics & Genetics
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
  • Sequence Assembly
ISO Topic(s):