Data from: Genetic mapping and QTL analysis for peanut smut resistance

This collection contains supplementary information for the manuscript “Genetic mapping and QTL analysis for peanut smut resistance”, which reports the genetic map and quantitative trait loci associated with resistance to peanut smut, a disease caused by the fungus Thecaphora frezii. The information includes genotyping data of a 103 recombinant inbred line (RIL) population {susceptible Arachis hypogaea subsp.hypogaea × resistant synthetic amphidiploid [(A. correntina × A. cardenasii) × A. batizocoi]⁴ˣ} and parental lines, generated with the Axiom_Arachis2 SNP array.

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Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt Data
Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite...
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Supplementary Data 2: Genotyping calls in VCF format File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcfData
Supplementary Data 2: Genotyping calls in VCF format
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RILs of the mapping populationData
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Field	Value
Tags	np301 NP303 Arachis_Axiom2 SNP array SNP peanut Arachis Arachis hypogaea Smut Resistance peanut smut
Modified	2022-09-28
Release Date	2021-05-03
Identifier	65c23e95-2fcb-44c2-b7e7-439755669ba5
Spatial / Geographical Coverage Area	POINT (-63.967895507813 -32.793431700307)
Publisher	Ag Data Commons
Spatial / Geographical Coverage Location	General Cabrera, Córdoba Province, Argentina
Temporal Coverage	January 1, 2016 to December 31, 2018
License	U.S. Public Domain
Data Dictionary	https://data.nal.usda.gov/dataset/data-genetic-mapping-and-qtl-analysis-...
Contact Name	Arias, Renee S.
Contact Email	Renee.Arias@usda.gov; Alicia.Massa@usda.gov
Public Access Level	Public
Program Code	005:040 - Department of Agriculture - National Research
Bureau Code	005:18 - Agricultural Research Service

Extended Metadata:

Field	Value
Authors	de Blas, Francisco J. (ORCID) Massa, Alicia N. (ORCID) Arias, Renee S. (ORCID)
Peer Reviewed	No
Intended Use	Genetic data may be used for comparative genetic analysis of genome regions conferring smut resistance in peanut.
Equipment or Software Used	Axiom_Arachis2
Funding Sources	Agricultural Research Service 6044-21000-005-00-D Agricultural Research Service 6044-42000-011-00D
Primary Article	de Blas, F. J., Bruno, C. I., Arias, R. S., Ballén-Taborda, C., Mamani, E., Oddino, C., Rosso, M., Costero, B. P., Bressano, M., Soave, J. H., Soave, S. J., Buteler, M. I., Seijo, J. G., & Massa, A. N. (2021). Genetic mapping and QTL analysis for peanut smut resistance. BMC Plant Biology, 21(1). https://doi.org/10.1186/s12870-021-03023-4 AgID: 10113/7435007
Dataset DOI (digital object identifier)	10.15482/USDA.ADC/1522387
Product Type	Dataset

Field	Value
OSTI Identifier
ISO Topic(s)	biota environment
National Agricultural Library Thesaurus Term	chromosome mapping quantitative trait loci smut diseases disease resistance fungi genotyping inbred lines amphidiploidy single nucleotide polymorphism arrays single nucleotide polymorphism peanuts Arachis hypogaea subsp. hypogaea Thecaphora hybrids Argentina
Ag Data Commons Keywords	Agroecosystems & Environment Agricultural pests Agroecosystems & Environment Plants & Crops Plant health Plants & Crops Traits Genomics & Genetics Plants & Crops Agricultural Products Plants Leguminous crops Peanuts Agricultural Products Plants Leguminous crops Agricultural Products Plants Agricultural Products

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