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U.S. Public Domain
[Open Data]

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Data from: Genome analyses of fungal pathogens Neonectria faginata and Neonectria coccinea

Protein predictions using Augustus web for the fungi Neonectria coccinea and N. faginata, as well as protein prediction of closely related species N. ditissima, and Corinectria fuckeliana.

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FieldValue
Tags
proteome
ascomycetous fungi
beech
disease
NP303
Modified
2022-07-07
Release Date
2022-07-07
Identifier
21914e03-55a5-413c-95ff-044f411d017b
Spatial / Geographical Coverage Area
POINT (-69.114990234375 45.294935556934)
POINT (-72.09228515625 44.037010249008)
POINT (10.0634765625 51.38806611676)
POINT (173.49609375 -41.587715505005)
Publisher
Ag Data Commons
Spatial / Geographical Coverage Location
USA: Maine, USA: New Hampshire, Germany, New Zealand
Temporal Coverage
October 22, 2020
License
U.S. Public Domain
Contact Name
Salgado-Salazar, Catalina
Contact Email
catalina.salgado@usda.gov
Public Access Level
Public
Program Code
005:040 - Department of Agriculture - National Research
Bureau Code
005:18 - Agricultural Research Service
Extended Metadata: 
FieldValue
Authors
Salgado-Salazar, Catalina (ORCID)
Skaltsas, Demetra (ORCID)
Phipps, Tunesha
Castlebury, Lisa (ORCID)
Peer Reviewed
No
Intended Use
Research only. The predicted proteome of fungi can be functionally annotated to determine molecular activities of gene products.
Use Limitations
Research only.
Equipment or Software Used
Augustus web server
Funding Sources
Agricultural Research Service
8042-22000-298-00D
Primary Article

Salgado-Salazar, C., Skaltsas, D. N., Phipps, T., & Castlebury, L. A. (2021). Comparative genome analyses suggest a hemibiotrophic lifestyle and virulence differences for the beech bark disease fungal pathogens <i>Neonectria faginata</i> and <i>Neonectria coccinea</i>. G3 Genes|Genomes|Genetics, 11(4). https://doi.org/10.1093/g3journal/jkab071
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1527710
Product Type
Dataset
FieldValue
OSTI Identifier
ISO Topic(s)
biota
environment
National Agricultural Library Thesaurus Term
fungi
pathogens
Neonectria
beech bark disease
mortality
forest stands
North America
Europe
disease control
genomics
genome assembly
proteome
proteins
mitogen-activated protein kinase
virulence
disease severity
polysaccharides
secondary metabolites
biosynthesis
cytochrome-c oxidase
mitochondrial genome
mitochondrial DNA
introns
Fagus grandifolia
Fagus sylvatica
forests
trophic relationships
Ag Data Commons Keywords
  • Agroecosystems & Environment
  • Agroecosystems & Environment
  • Agricultural pests
  • Genomics & Genetics
  • Genomics & Genetics
  • Proteomes
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
  • Genome
  • Genome assembly
Program
AgBioData

Suggested Citations:

(original article) Salgado-Salazar, C., Skaltsas, D. N., Phipps, T., & Castlebury, L. A. (2021). Comparative genome analyses suggest a hemibiotrophic lifestyle and virulence differences for the beech bark disease fungal pathogens <i>Neonectria faginata</i> and <i>Neonectria coccinea</i>. G3 Genes|Genomes|Genetics, 11(4). https://doi.org/10.1093/g3journal/jkab071

(dataset) Salgado-Salazar, Catalina; Skaltsas, Demetra; Phipps, Tunesha; Castlebury, Lisa (2022). Data from: Genome analyses of fungal pathogens Neonectria faginata and Neonectria coccinea. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1527710. Accessed 2023-12-03.