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Metadata for NCBI Accession PRJNA862140.xlsx (12.69 kB)

Data From: Habitat type and host grazing regimen influence the soil microbial diversity and communities within potential biting midge larval habitats

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posted on 2024-02-21, 20:16 authored by Saraswoti Neupane, Travis Davis, Dana Nayduch, Bethany McgregorBethany Mcgregor

Culicoides biting midges are important vectors of diverse microbes such as viruses, protozoa, and nematodes that cause diseases in wild and domestic animals. However, little is known about the role of microbial communities in midge larval habitat utilization in the wild. In this study, we characterized microbial communities (bacterial, protistan, fungal and metazoan) in soils from disturbed (bison and cattle grazed) and undisturbed (non-grazed) pond and spring potential midge larval habitats. We evaluated the influence of habitat and grazing disturbance and their interaction on microbial communities, diversity, presence of midges, and soil properties. These data can be used to better understand environmental microbial communities in tallgrass prairie ecosystems associated with grazed versus ungrazed pond and spring habitats and to draw inferences on the interactions of these communities and soil properties with the presence of biting midge larvae. These data should not be used to make inferences for ecosystems other than tallgrass prairie, for animal management methods other than open cow-calf or bison grazing (such as feedlots, dairies, or stockyards), or for other grazing mammals (such as sheep or goats). These data were collected between the months of September and December and therefore are not representative of microbial communities present from January through August. Abbreviations used include Total Carbon (TC), Total Nitrogen (TN), Organic Matter (OM), Konza Prairie Biological Station (KPBS), Operational Taxonomic Unit (OTU), Principal Coordinates Analysis (PCoA), ribosomal RNA (rRNA), and vesicular stomatitis virus (VSV).

The raw Illumina MiSeq sequence data for this project can be found here: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA862140

Resources in this dataset:

  • Resource Title: Metadata for Midge Larval Habitat Soil Microbiome File Name: Metadata for NCBI Accession PRJNA862140.xlsx Resource Description: This spreadsheet links the raw sequence reads on NCBI with data on the presence/absence of Culicoides midges and soil chemistry data (% total soil nitrogen, % total soil carbon, and % organic matter).

Funding

USDA-ARS: 3020-32000-007-00D

USDA-ARS: 3020-32000-018-00D

History

Data contact name

McGregor, Bethany

Data contact email

Bethany.McGregor@usda.gov

Publisher

Ag Data Commons

Intended use

These data can be used to better understand environmental microbial communities in tallgrass prairie ecosystems associated with grazed versus ungrazed pond and spring habitats and to draw inferences on the interactions of these communities and soil properties with the presence of biting midge larvae.

Use limitations

These data should not be used to make inferences for ecosystems other than tallgrass prairies, for animal management methods other than open cow-calf or bison grazing (such as feedlots, dairies, or stockyards), or for other grazing mammals (such as sheep or goats). These data were collected between the months of September and December and therefore are not representative of microbial communities present from January through August.

Temporal Extent Start Date

2020-09-04

Temporal Extent End Date

2020-12-10

Theme

  • Not specified

Geographic Coverage

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Geographic location - description

Konza Prairie Biological Station, Located south of Manhattan, KS

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

habitats; grazing; Culicoides; viruses; Protozoa; Nematoda; microbial communities; midges; fungi; bison; cattle; soil properties; tallgrass prairies; ecosystems; insect larvae; animal husbandry; Vesiculovirus; microbiome; insect pests; hematophagous insects

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 104

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Neupane, Saraswoti; Davis, Travis; Nayduch, Dana; McGregor, Bethany L. (2023). Data From: Habitat type and host grazing regimen influence the soil microbial diversity and communities within potential biting midge larval habitats. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1528782

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