[Note: this dataset has been superseded by version 2: https://doi.org/10.15482/USDA.ADC/1522673 ]
This collection contains supplementary data for the manuscript "Legacy genetics of Arachis cardenasii in the peanut crop shows profound benefits of international seed exchange," which describes the impact of alleles from a wild relative of peanut, Arachis cardenasii, through analysis of those alleles across cultivars and breeding lines across many countries. The initial challenging cross, between tetraploid cultivated peanut (Arachis hypogaea) and the diploid species A. cardenasii, was carried out in the late 1960s. Subsequent work produce a tetraploid line that contained introgressed regions from A. cardenasii. Those chromosomal regions, several containing important resistance genes, were used in numerous breeding lines. The genetic legacy from A. cardenasii is documented in the files in this collection. The information includes genotyping data across peanut cultivars and breeding lines, generated through both genotyping arrays ("SNP chips") and whole-genome sequencing. Information in this collection also includes data related to impact of A. cardenasii on disease- and pest resistance in modern peanut varieties.
- Supplementary Data 1: Worldwide genotypes with A. cardenasii introgressionsxlsx
Single nucleotide polymorphism genotyping of 118 DNA samples from peanut...
MD5:Explore Data787.17 KB - Supplementary Data 2: Lineages and field data for lines containing A. cardenasii genetic materialxlsx
Catalog of accessions and lines containing A. cardenasii genetic material,...
MD5:Explore Data207.59 KB - Supplementary Data 3: Genetic fingerprint dataxlsx
Genetic fingerprint (marker) data for 45 accessions, indicating matches to...
MD5:Explore Data332.97 MB - Supplementary Data 4: Analysis of introgression regions in progeny of cultivars Middleton and Sutherland.xlsx
Excel file contains data of 270 Recombinant Inbred Lines developed from a...
MD5:Explore Data418.06 KB - Supplementary Data 5: Introgressions in six breeding lines and cultivars.Data
Genotype data (VCF format tsv files, compressed), for six breeding lines and...
MD5:Explore Data67.07 MB
Field | Value |
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Tags | |
Modified | 2022-05-24 |
Release Date | 2021-02-25 |
Identifier | 17f79a0d-d090-4c86-8bb9-d0f4b8ace6a6 |
Spatial / Geographical Coverage Area | POINT (-78.22265625 35.359936162877) POINT (-50.9765625 -13.036669323115) POINT (133.2421875 -26.873080965938) POINT (33.57421875 -13.531189770768) POINT (-1.5380859375 7.8674629195361) POINT (-6.6796875 13.094192140384) POINT (-14.677734375 14.587570555377) POINT (34.8486328125 -18.954350047559) POINT (6.240234375 8.6068207840793) POINT (32.6513671875 0.59737076880856) POINT (29.3994140625 -14.494519441321) POINT (77.87109375 19.740853992843) POINT (-63.28125 -29.291189838185) |
Publisher | Ag Data Commons |
Temporal Coverage | January 1, 1967 to December 31, 2020 |
License | |
Data Dictionary | |
Contact Name | David Bertioli |
Contact Email | |
Public Access Level | Public |
Program Code | 005:040 - Department of Agriculture - National Research |
Bureau Code | 005:18 - Agricultural Research Service |