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Data from: Microarray analysis of subcutaneous adipose tissue from mature cows with divergent body weight gain after feed restriction and realimentation

Body weight response to periods of feed restriction and realimentation is critical and relevant to the agricultural industry. The purpose of this study was to evaluate differentially expressed genes identified in subcutaneous adipose tissue collected from cows divergent in body weight (BW) gain after feed restriction and realimentation. We compared adipose samples from cows with greater gain based on average daily gain (ADG) during realimentation with samples from cows with lesser gain. Specifically, there were four comparisons including two comparing the high and low gain animals across each feeding period (feed restriction and realimentation) and two that compared differences in feed restriction and realimentation across high or low gain classifications. Using microarray analysis, we provide a set of differentially expressed genes identified between the high and low gain at both periods of nutrient restriction and realimentation. These data identify multiple differentially expressed genes between these two phenotypes across both nutritional environments.

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FieldValue
Modified
2022-09-14
Release Date
2017-12-14
Identifier
1342f7f0-9439-4061-816c-d1b77b738256
Publisher
Data in Brief
License
Creative Commons Attribution
Contact Name
Lindholm-Perry, Amanda K.
Contact Email
Amanda.Lindholm@ars.usda.gov
Public Access Level
Public
Program Code
005:040 - Department of Agriculture - National Research
Bureau Code
005:18 - Agricultural Research Service
Extended Metadata: 
FieldValue
Authors
Cunningham, Hannah C. (ORCID)
Cammack, Kristi M. (ORCID)
Hales, Kristin E. (ORCID)
Freetly, Harvey C. (ORCID)
Lindholm-Perry, Amanda K. (ORCID)
Peer Reviewed
No
Intended Use
Identifying gene networks and metabolic pathways potentially involved in the divergence of weight gain may provide a platform for further investigation into some of the critical control points of feed efficiency. Adipose tissue is a highly metabolically active tissue and also is closely regulated by energetics of the animal. Gene networks identified in this tissue may provide insight into how, during extreme energy balance times, animals divergent in body weight gain respond and adjust to these nutritional extremes. Differentially expressed genes and pathways identified in these comparisons may be used in future experiments investigating response in adipose tissue to nutritional status and divergence in feed efficiency. Datasets evaluating the molecular mechanisms of feed restriction and realimentation in cattle are scarce; thus, these data may be useful for inclusion with additional sets of similar data for a meta-analysis of nutritional treatments.
Funding Sources
Agricultural Research Service
Primary Article

Cunningham, H., Cammack, K., Hales, K., Freetly, H., & Lindholm-Perry, A. (2018). Microarray analysis of subcutaneous adipose tissue from mature cows with divergent body weight gain after feed restriction and realimentation. Data in Brief, 16, 303-311. https://doi.org/10.1016/j.dib.2017.10.016

AgID: 5922768
Method Citation

Cunningham, H., Cammack, K., Hales, K., Freetly, H., & Lindholm-Perry, A. (2018). Microarray analysis of subcutaneous adipose tissue from mature cows with divergent body weight gain after feed restriction and realimentation. Data in Brief, 16, 303-311. https://doi.org/10.1016/j.dib.2017.10.016

AgID: 5922768
Dataset DOI (digital object identifier)
10.1016/j.dib.2017.10.016
Product Type
Dataset
FieldValue
ISO Topic(s)
biota
farming
National Agricultural Library Thesaurus Term
body weight
restricted feeding
repletion
agricultural industry
genes
adipose tissue
cows
average daily gain
microarray technology
phenotype
transcriptome
subcutaneous fat
beef cows
Ag Data Commons Keywords
  • Animals & Livestock
  • Animal health
  • Genomics & Genetics
  • Transcriptome
  • Animals & Livestock
  • Animal production
  • Genomics & Genetics
  • Expression analysis
  • Microarrays

Suggested Citations:

(original article) Cunningham, H., Cammack, K., Hales, K., Freetly, H., & Lindholm-Perry, A. (2018). Microarray analysis of subcutaneous adipose tissue from mature cows with divergent body weight gain after feed restriction and realimentation. Data in Brief, 16, 303-311. https://doi.org/10.1016/j.dib.2017.10.016

(dataset) Cunningham, Hannah C.; Cammack, Kristi M.; Hales, Kristin E.; Freetly, Harvey C.; Lindholm-Perry, Amanda K. (2017). Data from: Microarray analysis of subcutaneous adipose tissue from mature cows with divergent body weight gain after feed restriction and realimentation. Data in Brief. https://doi.org/10.1016/j.dib.2017.10.016. Accessed 2023-12-11.