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Data from: Multiple immune pathways control susceptibility of Arabidopsis thaliana to the parasitic weed Phelipanche aegyptiaca

Four files are included in this dataset.

  1. An R script (using the ggplot2 package) for generating odds ratio graphs that depict both the 95% and 99% confidence interval across all tested mutants in the referenced paper (Figures 2-4). This script can be used to depict odds ratios and multiple confidence intervals for any dataset with a large number of independent treatment groups.

  2. An example csv file for use with the R script.

  3. A SAS script for running the Proc Glimmix procedure for generating odds ratios of attachments for all tested mutant plant lines in the referenced paper. We used a generalized linear mixed model (SAS/STAT(R) 9.2 User's Guide, 2016) to analyze different rates of parasitization at three developmental marker points. The model is based on the binomial distribution with the logit link.

  4. An example JMP file for use with the SAS script. Fixed effects and random blocks can be defined depending on the experimental setup.This script can be used for calculating odds ratios for any dataset in which many different treatment groups are compared to a single control group.

Dataset Info

These fields are compatible with DCAT, an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web.
FieldValue
Authors
Clarke, Christopher R.
(ORCID)
Van Mullekom, Jennifer H.
Westwood, James H.
(ORCID)
Product Type
Software
Publisher
Ag Data Commons
Contact Name
Clarke, Christopher
Contact Email
Public Access Level
Public
Primary Article

Clarke, C.R., Park, S.Y., Tuosto, R., Jia. X., McGough, A., Van Mullekom, J.H., & Westwood, J.H. (expected 2019). Multiple immune pathways control susceptibility of Arabidopsis thaliana to the parasitic weed Phelipanche aegyptiaca. Submitted.

License
Funding Source(s)
National Institute of Food and Agriculture
2015-67012-22821
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1503694
Modified Date
2019-04-10
Release Date
2019-04-04
Ag Data Commons Keywords: 
  • Plants & Crops
ISO Topic(s):