Ag Data Commons
Browse

File(s) stored somewhere else

https://doi.org/10.1016/j.dib.2021.106852

Please note: Linked content is NOT stored on Ag Data Commons and we can't guarantee its availability, quality, security or accept any liability.

Data from: Raw Pacific Biosciences and Illumina sequencing reads and assembled genome data for cattle ticks Rhipicephalus microplus and Rhipicephalus annulatus

dataset
posted on 2024-02-15, 22:51 authored by Felix D. Guerrero, Noushin Ghaffari, Kylie BendeleKylie Bendele, Richard P. Metz, C. Michael Dickens, Phillip D. Blood, Jason Tidwell, Robert J. Miller, Adalberto A. Pérez de León, Pete D. Teel, Charles D. Johnson

This study produced reference quality genomes of two cattle ticks Rhipicephalus microplus and Rhipicephalus annulatus, which can be used to identify drug targets with acaricidal activity and refine anti-tick vaccine approaches.


Resources in this dataset:

  • Resource Title: Raw pacific biosciences and illumina sequencing reads and assembled genome data for the cattle ticks Rhipicephalus microplus and Rhipicephalus annulatus.

    File Name: Web Page, url: https://doi.org/10.1016/j.dib.2021.106852

    Files referenced in the article may be found in the related content section of this record.

Funding

USDA-ARS: 3094-32000-036-00D

USDA-ARS: Cooperative Agreement No. 58-3094-6-017

National Science Foundation: ACI-1548562

National Science Foundation: ACI-1445606

History

Data contact name

Bendele, Kylie

Data contact email

Kylie.Bendele@usda.gov

Publisher

NCBI

Intended use

These are high quality genomes of important cattle parasites that vector bovine pathogens. Researchers studying arachnids and tick genomics, comparative genomics, and arachnids evolution will find the assembled genome valuable. The datasets can be used to study genes involved in the development of pesticide resistance in these economically important tick species. Genes present in these genomes can provide foundational data for research to identify drug targets for chemical entities with acaricidal activity and also refine anti-tick vaccine approaches.

Temporal Extent Start Date

2001-01-01

Temporal Extent End Date

2018-12-31

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-98.344652,26.398596]},"type":"Feature","properties":{}}]}

Geographic location - description

USDA-ARS Cattle Fever Tick Research Laboratory, United States Department of Agriculture, 22675 N. Moorefield Rd, Edinburg, TX 78541, USA

ISO Topic Category

  • farming

Ag Data Commons Group

  • Veterinary Pest Genomics Center

National Agricultural Library Thesaurus terms

ticks; Rhipicephalus microplus; Rhipicephalus annulatus; acaricidal properties; vaccines; genome assembly; cattle; pathogens; genes; pesticide resistance; pest control; tick control

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 104

Primary article PubAg Handle

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Guerrero, F. D., Ghaffari, N., Bendele, K. G., Metz, R. P., Dickens, C. M., Blood, P. D., Tidwell, J., Miller, R. J., de León, A. A. P., Teel, P. D., & Johnson, C. D. (2021). Raw pacific biosciences and illumina sequencing reads and assembled genome data for the cattle ticks Rhipicephalus microplus and Rhipicephalus annulatus. Data in Brief (Vol. 35, p. 106852). Elsevier BV. https://doi.org/10.1016/j.dib.2021.106852

Usage metrics

    Categories

    Keywords

    Rhipicephalus microplusRhipicephalus annulatusPacBio genome sequencingLarge genome assemblycattle tickCanu assemblerNP104data.govARS

    Licence

    CC0

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC