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Tables S1–S12. Table S1. Sample trimming results of 2×101 bp PE Illumina. Table S2. BlastX alignment of the Culicoides unigene to the NR, and Aedes and Culex transcriptomes. Table S3. Unique GO accessions of the Culicoides transcriptome mapped to the GO database. Table S4. Top 100 genes with at least 2-fold increase in abundance in early response to a blood meal. Table S5. Effect of blood feeding on differential expression of genes in female Culicoides sonorensis. Table S6. Significant differentially expressed genes between teneral and early blood-fed C. sonorensis. Table S7. Significant differentially expressed genes between teneral and late blood-fed C. sonorensis. Table S8. Significant differentially expressed genes between early and late blood-fed C. sonorensis. Table S9. Significant differentially expressed genes between teneral and early sugar-fed C. sonorensis. Table S10. Significant differentially expressed genes between teneral and late sugar-fed C. sonorensis. Table S11. Effect of sucrose feeding on differential expression of genes in female Culicoides sonorensis. Table S12. Differential expression of putative housekeeping or reference genes in C. sonorensis. doi:10.1371/journal.pone.0098123.s003