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Data from: Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean

dataset
posted on 2024-02-13, 13:44 authored by Surendra Neupane, Febina M. Mathew, Adam J. Varenhorst, Madhav P. Nepal

Soybean aphid (Aphis glycines; SBA) and soybean cyst nematode (Heterodera glycines; SCN) are two major pests of soybean (Glycine max) in the United States of America. This study aims to characterize three-way interactions among soybean, SBA, and SCN using both demographic and genetic datasets. SCN-resistant and SCN-susceptible soybean cultivars with a combination of soybean aphids (biotype 1) and SCN (HG type 0) in a randomized complete block design (RCBD) with six blocks were used to evaluate the three-way interactions in a greenhouse setup. Treatments receiving SCN were infested at planting with 2000 nematode eggs, and the treatments with soybean aphids were infested at second trifoliate growth stage (V2) with 15 soybean aphids. The whole roots were sampled from plants at 5 and 30 days post SBA infestation for RNA sequencing using Illumina Hiseq. 3000. The data comprises of 47 libraries that are useful for further analyses of important genes, which are involved in interaction effects of SBA and SCN on soybean.


Resources in this dataset:

Funding

USDA-NIFA: SD00H469-13

USDA-NIFA: SD00H659-18

History

Data contact name

Nepal, Madhav P.

Data contact email

Madhav.Nepal@sdstate.edu

Publisher

Scientific Data

Intended use

The 47 RNA libraries will be useful for analyses of important genes involved in interaction effects of soybean aphid and soybean cyst nematode on soybean plants.

Temporal Extent Start Date

2019-07-24

Theme

  • Not specified

Geographic Coverage

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Geographic location - description

United States

ISO Topic Category

  • biota
  • farming

National Agricultural Library Thesaurus terms

transcriptomics; soybeans; cyst nematodes; Aphis glycines; Aphis (Aphididae); Heterodera glycines; pests; Glycine max; United States; data collection; cultivars; greenhouses; planting; Nematoda; eggs; developmental stages; roots; sequence analysis; genes; transcription (genetics); cropland; ecosystems

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Neupane, Surendra; Mathew, Febina M.; Varenhorst, Adam J.; Nepal, Madhav P. (2019). Data from: Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean. Scientific Data. https://doi.org/10.1038/s41597-019-0140-4

Usage metrics

    Categories

    Keywords

    soybean aphidsoybeansnematodespestscultivarsgreenhouse

    Licence

    U.S. Public Domain

    Exports

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