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Data from: Whole-genome sequence data and analysis of a Staphylococcus aureus strain SJTUF_J27 isolated from seaweed

The complete genome sequence data of S. aureus SJTUF_J27 isolated from seaweed in China is reported here. The size of the genome is 2.8 Mbp with 32.9% G+C content, consisting of 2614 coding sequences and 77 RNAs. A number of virulence factors, including antimicrobial resistance genes (fluoroquinolone, beta-lactams, fosfomycin, mupirocin, trimethoprim, and aminocoumarin) and the egc enterotoxin cluster, were found in the genome. In addition, the genes encoding metal-binding proteins and associated heavy metal resistance were identified. Phylogenetic data analysis, based upon genome-wide single nucleotide polymorphisms (SNPs), and comparative genomic evaluation with BLAST Ring Image Generator (BRIG) were performed for SJTUF_J27 and four S. aureus strains isolated from food. The completed genome data was deposited in NCBI's GenBank under the accession number CP019117, https://www.ncbi.nlm.nih.gov/nuccore/CP019117.

Dataset Info

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FieldValue
Authors
Xie, Yanping
He, Yiping
(ORCID)
Ghatak, Sandeep
Irwin, Peter
Yan, Xianghe
(ORCID)
Strobaugh, Terence
Gehring, Andrew
Product Type
Genome/Genetics Data
Spatial / Geographical Coverage Area
POINT (121.47 31.23)
Spatial / Geographical Coverage Location
Shanghai, China
Intended Use
The complete genome sequence of S. aureus SJTUF_J27 isolated from Chinese seaweed provides a genetic basis for understanding the epidemiology of food-associated staphylococci. The sequence data will be useful for comparative genomic study of S. aureus. Analyses of virulence and antibiotic resistance genes can be used to predict the probability of the organism being a multidrug resistance pathogen. The genome-wide SNP analysis generated a high-resolution phylogenetic tree of S. aureus food isolates, which is a useful tool for accurately discriminating closely related species.
Publisher
Ag Data Commons
Contact Name
He, Yiping
Contact Email
Public Access Level
Public
Preferred Dataset Citation
Xie, Y., He, Y., Ghatak, S., Irwin, P., Yan, X., Strobaugh, T., & Gehring A. (2018). Whole-genome sequence data and analysis of a <em>Staphylococcus aureus</em> strain SJTUF_J27 isolated from seaweed, <em>Data in Brief</em>, https://doi.org/10.1016/j.dib.2018.08.084
Primary Article

Xie, Y., He, Y., Ghatak, S., Irwin, P., Yan, X., Strobaugh, T., & Gehring A. (2018). Whole-genome sequence data and analysis of a Staphylococcus aureus strain SJTUF_J27 isolated from seaweed, Data in Brief

Methods Citation

Xie, Y., He, Y., Ghatak, S., Irwin, P., Yan, X., Strobaugh, T., & Gehring A. (2018). Whole-genome sequence data and analysis of a Staphylococcus aureus strain SJTUF_J27 isolated from seaweed, Data in Brief

License
Funding Source(s)
Agricultural Research Service
Dataset DOI (digital object identifier)
10.1016/j.dib.2018.08.084
Program Code
005:037 - Department of Agriculture - Research and Education
Bureau Code
005:18 - Agricultural Research Service
Modified Date
2018-10-26
Release Date
2018-09-04
Ag Data Commons Keywords: 
  • Genomics & Genetics
  • Genome
  • Genome assembly
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
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