U.S. flag

An official website of the United States government

Ag Data Commons migration begins October 18, 2023

The Ag Data Commons is migrating to a new platform – an institutional portal on Figshare. Starting October 18 the current system will be available for search and download only. Submissions will resume after the launch of our portal on Figshare in November. Stay tuned for details!

License

U.S. Public Domain
[Open Data]

Other Access

The information on this page (the dataset metadata) is also available in these formats:

JSON RDF

via the DKAN API

Data Extent

Social

Data from: Whole Genome Sequences of the Raspberry and Strawberry Pathogens Phytophthora rubi and P. fragariae

Phytophthora rubi and P. fragariae are two closely related soil-borne oomycete plant pathogens that exhibit strong morphological and physiological similarities but are specialized to infect different hosts of economic importance, namely, raspberry and strawberry. Here, we report the draft genome sequences of these two Phytophthora species as a first step toward understanding the genomic processes underlying plant host adaptation in these pathogens.

See all >>
FieldValue
Tags
P. fragariae
Phytophthora rubi
Soil
pathogens
genome sequences
plants
Modified
2022-09-28
Release Date
2019-11-15
Identifier
4cbde83c-8532-42ad-91e4-b7dd9efa11df
Spatial / Geographical Coverage Area
POLYGON ((-531.5625 -82.853382291761, -531.5625 84.98395580953, -164.53125 84.98395580953, -164.53125 -82.853382291761))
Publisher
NCBI GenBank
Temporal Coverage
January 1, 2017
License
U.S. Public Domain
Contact Name
Grünwald, Niklaus J.
Contact Email
nik.grunwald@ars.usda.gov
Public Access Level
Public
Program Code
005:040 - Department of Agriculture - National Research
Bureau Code
005:18 - Agricultural Research Service
Extended Metadata: 
FieldValue
Authors
Tabima, Javier F. (ORCID)
Kronmiller, Brent A. (ORCID)
Press, Caroline M. (ORCID)
Tyler, Brett M. (ORCID)
Zasada, Inga A. (Scopus Author ID)
Grünwald, Niklaus J. (ORCID)
Peer Reviewed
No
Intended Use
Sequencing the genomes of these species will advance our understanding of the genomic mechanisms underlying host adaptation and knowledge of molecular mechanisms of plant pathogenicity.
Equipment or Software Used
Illumina HiSeq 2000
Funding Sources
Agricultural Research Service
2072-12220-004-00-D
Agricultural Research Service
2072-22000-039-00-D
National Institute of Food and Agriculture
2010-511001-21649
Primary Article

Tabima, J. F., Kronmiller, B. A., Press, C. M., Tyler, B. M., Zasada, I. A., & Grünwald, N. J. (2017). Whole Genome Sequences of the Raspberry and Strawberry Pathogens <i>Phytophthora rubi</i> and <i>P. fragariae</i>. Molecular Plant-Microbe Interactions®, 30(10), 767-769. https://doi.org/10.1094/mpmi-04-17-0081-a

AgID: 5800523
Method Citation

Tabima, J. F., Kronmiller, B. A., Press, C. M., Tyler, B. M., Zasada, I. A., & Grünwald, N. J. (2017). Whole Genome Sequences of the Raspberry and Strawberry Pathogens <i>Phytophthora rubi</i> and <i>P. fragariae</i>. Molecular Plant-Microbe Interactions®, 30(10), 767-769. https://doi.org/10.1094/mpmi-04-17-0081-a

AgID: 5800523
Product Type
Dataset
Related Content
Phytophthora fragariae strain CBS 209.46, whole genome shotgun sequencing project - GenBank: MWJK00000000.1
Phytophthora rubi strain pd0101050015038, whole genome shotgun sequencing project GenBank: MWJL00000000.1
Phytophthora rubi and Phytophthora fragariae - BioProject Accession PRJNA375089
FieldValue
ISO Topic(s)
biota
farming
National Agricultural Library Thesaurus Term
Phytophthora
Oomycetes
plant pathogens
hosts
raspberries
strawberries
genome
genomics
Ag Data Commons Keywords
  • Plants & Crops
  • Plant health
  • Plants & Crops
  • Genomics & Genetics
  • Raw sequence
  • Genomics & Genetics
  • Sequence Assembly
  • Genomics & Genetics

Suggested Citations:

(original article) Tabima, J. F., Kronmiller, B. A., Press, C. M., Tyler, B. M., Zasada, I. A., & Grünwald, N. J. (2017). Whole Genome Sequences of the Raspberry and Strawberry Pathogens <i>Phytophthora rubi</i> and <i>P. fragariae</i>. Molecular Plant-Microbe Interactions®, 30(10), 767-769. https://doi.org/10.1094/mpmi-04-17-0081-a

(dataset) Tabima, Javier F.; Kronmiller, Brent A.; Press, Caroline M.; Tyler, Brett M.; Zasada, Inga A.; Grünwald, Niklaus J. (2019). Data from: Whole Genome Sequences of the Raspberry and Strawberry Pathogens Phytophthora rubi and P. fragariae. NCBI GenBank. https://data.nal.usda.gov/dataset/data-whole-genome-sequences-raspberry-and-strawberry-pathogens-phytophthora-rubi-and-p-fragariae. Accessed 2023-11-28.