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Diaphorina citri genome assembly Diaci 1.9

Asian citrus psyllid (Diaphorina citri)

Diaci1.9 is interim version of the Diaphorina citri psyllid genome based on Pacbio long reads. We have generated 36.2Gb of Pacbio long reads from 41 SMRT cells with a coverage of 80X for the 400-450Mb psyllid genome. The canu assembler was used to create an interim assembly with a contig N50 of 115.8kb and 8352 contigs. DIACI v1.9 has 8,352 contigs compared to 161,988 contigs in Diaci1.1 genome assembly. It has a contig N50 of 115.8kb and does not contain any Ns. Please note that this is an interim assembly so we will not be annotating it.

This project was funded by the U.S. Department of Agriculture under the DEVELOPING AN INFRASTRUCTURE AND PRODUCT TEST PIPELINE TO DELIVER NOVEL THERAPIES FOR CITRUS GREENING DISEASE grant.

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FieldValue
Modified
2019-08-05
Release Date
2017-02-07
Identifier
cb1e4484-2684-4bb1-a4d8-8c2f4ce27850
Publisher
Ag Data Commons
License
Creative Commons CCZero
Contact Name
Saha, Surya
Contact Email
ss2489@cornell.edu
Bureau Code
005:00 - Department of Agriculture
Extended Metadata: 
FieldValue
Authors
Saha, Surya (ORCID)
Hunter, Wayne B. (ORCID)
Mueller, Lukas A. (ORCID)
Brown, Susan (Scopus Author ID)
Peer Reviewed
No
Funding Sources
U.S. Department of Agriculture
2015-70016-23028
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1342727
Product Type
Dataset
Related Content
Diaphorina citri MCOT sequences
Diaphorina citri genome assembly Diaci 1.1
FieldValue
OSTI Identifier
ISO Topic(s)
biota
National Agricultural Library Thesaurus Term
genome assembly
Diaphorina citri
Asian citrus psyllid
Ag Data Commons Keywords
  • Genomics & Genetics
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
  • Genome
  • Genome assembly
  • Agroecosystems & Environment
  • Agroecosystems & Environment
  • Parasites and Vectors
Program
Insects 5K – i5K
Organism project
Diaphorina citri

Suggested Citation:

(dataset) Saha, Surya; Hunter, Wayne B.; Mueller, Lukas A.; Brown, Susan (2017). Diaphorina citri genome assembly Diaci 1.9. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1342727. Accessed 2023-12-04.