Diaci1.9 is interim version of the Diaphorina citri psyllid genome based on Pacbio long reads. We have generated 36.2Gb of Pacbio long reads from 41 SMRT cells with a coverage of 80X for the 400-450Mb psyllid genome. The canu assembler was used to create an interim assembly with a contig N50 of 115.8kb and 8352 contigs. DIACI v1.9 has 8,352 contigs compared to 161,988 contigs in Diaci1.1 genome assembly. It has a contig N50 of 115.8kb and does not contain any Ns. Please note that this is an interim assembly so we will not be annotating it.
This project was funded by the U.S. Department of Agriculture under the DEVELOPING AN INFRASTRUCTURE AND PRODUCT TEST PIPELINE TO DELIVER NOVEL THERAPIES FOR CITRUS GREENING DISEASE grant.
- Diaphorina citri genome assembly Diaci 1.9Data
This resource is a fasta file of the DIACI_v1.9 genome assembly.MD5:Explore Data158.01 MB
|Release Date|| |
Ag Data Commons
|Contact Name|| |
|Bureau Code|| |
005:00 - Department of Agriculture