Diaphorina citri genome assembly Diaci 1.9

Diaci1.9 is interim version of the Diaphorina citri psyllid genome based on Pacbio long reads. We have generated 36.2Gb of Pacbio long reads from 41 SMRT cells with a coverage of 80X for the 400-450Mb psyllid genome. The canu assembler was used to create an interim assembly with a contig N50 of 115.8kb and 8352 contigs. DIACI v1.9 has 8,352 contigs compared to 161,988 contigs in Diaci1.1 genome assembly. It has a contig N50 of 115.8kb and does not contain any Ns. Please note that this is an interim assembly so we will not be annotating it.

This project was funded by the U.S. Department of Agriculture under the DEVELOPING AN INFRASTRUCTURE AND PRODUCT TEST PIPELINE TO DELIVER NOVEL THERAPIES FOR CITRUS GREENING DISEASE grant.

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Diaphorina citri genome assembly Diaci 1.9Data
This resource is a fasta file of the DIACI_v1.9 genome assembly.

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Field	Value
Modified	2019-08-05
Release Date	2017-02-07
Identifier	cb1e4484-2684-4bb1-a4d8-8c2f4ce27850
Publisher	Ag Data Commons
License	Creative Commons CCZero
Contact Name	Saha, Surya
Contact Email	ss2489@cornell.edu
Bureau Code	005:00 - Department of Agriculture

Extended Metadata:

Field	Value
Authors	Saha, Surya (ORCID) Hunter, Wayne B. (ORCID) Mueller, Lukas A. (ORCID) Brown, Susan (Scopus Author ID)
Peer Reviewed	No
Funding Sources	U.S. Department of Agriculture 2015-70016-23028
Dataset DOI (digital object identifier)	10.15482/USDA.ADC/1342727
Product Type	Dataset
Related Content	Diaphorina citri MCOT sequences Diaphorina citri genome assembly Diaci 1.1

Field	Value
OSTI Identifier
ISO Topic(s)	biota
National Agricultural Library Thesaurus Term	genome assembly Diaphorina citri Asian citrus psyllid
Ag Data Commons Keywords	Genomics & Genetics Genomics & Genetics Genome Genomics & Genetics Genome Genome assembly Agroecosystems & Environment Agroecosystems & Environment Parasites and Vectors
Program	Insects 5K – i5K Organism project Diaphorina citri

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