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Data from: Differential gene expression in red imported fire ant (Solenopsis invicta) (Hymenoptera: Formicidae) larval and pupal stages

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posted on 2023-12-14, 14:13 authored by Margaret Allen, Michael Grodowitz, Michael Sparks, Joshua Rhoades

12 files (6 sets of paired Illumina FASTQ files) transcriptomes (expressed genes) of the fourth (final) larval and early (white) pupal stages of Solenopsis invicta from Mississippi Delta.


Resources in this dataset:

  • Resource Title: RNA-seq Larva sample Colony 1.

    File Name: A01L4_1.zip

    Resource Description: This is the first of the paired samples; the total set includes 3 paired Illumina files from larvae, and 3 paired Illumina files from pupae. Colony 1 samples are from 4th instar larvae: paired Illumina fastq files A01L4_1 and A01L4_2; and white pupae: X01wp_1 and X01wp_2.

    Resource Software Recommended: A01L4_1,url: www.cyverse.org


  • Resource Title: RNA-seq Larva sample Colony 1.

    File Name: A01L4_2.zip

    Resource Description: This is the second of the paired samples for larvae from Colony 1. Colony 1 samples are from 4th instar larvae: paired Illumina fastq files A01L4_1 and A01L4_2; and white pupae: X01wp_1 and X01wp_2.

    Resource Software Recommended: Any assembly program that handles paired Illumina files,url: www.cyverse.org


  • Resource Title: RNA-seq pupa sample Colony 1.

    File Name: X01wp_1.zip

    Resource Description: This is the first of the paired samples. Colony 1 samples are from 4th instar larvae: paired Illumina fastq files A01L4_1 and A01L4_2; and white pupae: X01wp_1 and X01wp_2.

    Resource Software Recommended: Any assembly program that handles paired Illumina files,url: www.cyverse.org


  • Resource Title: RNA-seq pupa sample Colony 1..

    File Name: X01wp_2.zip

    Resource Description: This is the second of the paired samples. Colony 1 samples are from 4th instar larvae: paired Illumina fastq files A01L4_1 and A01L4_2; and white pupae: X01wp_1 and X01wp_2.

    Resource Software Recommended: Any assembly program that can use Illumina paired files,url: www.cyverse.org


  • Resource Title: RNA-seq larva sample Colony 2.

    File Name: B02L4_2.zip

    Resource Description: This is the second of the paired samples from Colony 2.

    Resource Software Recommended: Any assembly program that handles Illumina paired files for input,url: www.cyverse.org


  • Resource Title: RNA-seq larva sample Colony 2.

    File Name: B02L4_1.zip

    Resource Description: This is the first of the paired larva samples. Colony 2 samples include larva paired Illumina files B02L4_1 and B02L4_2, and paired pupa files Y02wp_1 and Y02wp_2.

    Resource Software Recommended: Any assembly program that handles paired Illumina files,url: www.cyverse.org


  • Resource Title: RNA-seq pupa sample Colony 2.

    File Name: Y02wp_1.zip

    Resource Description: This is the first of the paired pupa files. The set includes Y02wp_1 and Y02wp_2.

    Resource Software Recommended: Any assembly program that accepts Illumina paired reads,url: www.cyverse.org


  • Resource Title: RNA-seq pupa sample Colony 2.

    File Name: Y02wp_2.zip

    Resource Description: This is the second of the paired samples; the Colony 2 pupa samples are Y02wp_1 and Y02wp_2.

    Resource Software Recommended: Any assembly program that accepts Illumina paired data files,url: www.cyverse.org


  • Resource Title: RNA-seq pupa sample Colony 3.

    File Name: Z03wp_1.zip

    Resource Description: This is the first of paired sample files: the set includes Z03wp_1 and Z03wp_2.


  • Resource Title: RNA-seq pupa sample Colony 3.

    File Name: Z03wp_2.zip

    Resource Description: This is the second of the paired sample files: the set includes Z03wp_1 and Z03wp_2


  • Resource Title: RNA-seq larva sample Colony 3.

    File Name: C03L4_1.zip

    Resource Description: This is the first of the paired sample files: the set includes C03L4_1 and C03L4_2.


  • Resource Title: RNA-seq larva sample Colony 3.

    File Name: C03L4_2.zip

    Resource Description: This is the second of the paired sample files: the set includes C03L4_1 and C03L4_2

Funding

Agricultural Research Service, 6066-22320-009-00D

History

Data contact name

Allen, Margaret

Data contact email

meg.allen@usda.gov

Publisher

Ag Data Commons

Intended use

Identify genes expressed in fire ant brood. These data will be used in a CRIS project "Products for Invasive Ant Control" to identify RNA interference knockdown target genes.

Use limitations

These data were collected from a specific and unique geographic region infested by imported fire ants. The MS Delta is subject to extreme heat, humidity, and regular flood/drought cycles. It is also intensively cultivated.

Temporal Extent Start Date

2016-03-11

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-91.03344,33.44734]},"type":"Feature","properties":{}}]}

Geographic location - description

Mississippi Delta Region

ISO Topic Category

  • biota
  • environment

National Agricultural Library Thesaurus terms

transcriptome; genes; larvae; pupae; river deltas; Solenopsis invicta; gene expression regulation; Formicidae

OMB Bureau Code

  • 005:00 - Department of Agriculture

OMB Program Code

  • 005:037 - Research and Education

ARS National Program Number

  • 104

Primary article PubAg Handle

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Allen, Margaret; Grodowitz, Michael; Sparks, Michael; Rhoades, Joshua (2018). Data from: Differential gene expression in red imported fire ant (Solenopsis invicta) (Hymenoptera: Formicidae) larval and pupal stages. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1461500

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    Categories

    Keywords

    NP104

    Licence

    U.S. Public Domain

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