U.S. flag

An official website of the United States government

The Ag Data Commons is migrating

The Ag Data Commons is migrating to a new institutional portal on Figshare. The current system is available for search and download only. The new platform is open for submission with assistance from Ag Data Commons curators. Please contact NAL-ADC-Curator@usda.gov, if you need to publish or update your datasets.

License

U.S. Public Domain
[Open Data]

Other Access

The information on this page (the dataset metadata) is also available in these formats:

JSON RDF

via the DKAN API

Data Extent

Social

Drosophila bipectinata genome annotations v0.5.3 for genome assembly Dbip02082011

This research on Drosophila bipectinata genomics is part of the Drosophila modENCODE project.The Baylor College of Medicine is studying the comparative genomics of eight species of Drosophila, including biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii. RNA-Seq data were used with additional protein homology data for a MAKER automated annotation of the Drosophila bipectinata genome assembly Dbip02082011. This gene set is an unstable pre-release (v0.5.3), and is provided to facilitate manual curation and analyses. Gene identifiers from this gene set will not be maintained.

See all >>
FieldValue
Tags
i5k
Drosophila
Insects
Modified
2021-10-25
Release Date
2021-10-25
Identifier
5cf52486-f1de-43c7-a144-a675073cbce1
Spatial / Geographical Coverage Area
POINT (120.44963913532 23.481787640786)
Publisher
Ag Data Commons
Spatial / Geographical Coverage Location
Chia-I, Taiwan
Temporal Coverage
August 30, 2011
License
U.S. Public Domain
Contact Name
Richards, Stephen
Contact Email
stephenr@BCM.EDU
Public Access Level
Public
Extended Metadata: 
FieldValue
Authors
Richards, Stephen (ORCID)
Hughes, Daniel S.T. (Scopus Author ID)
Peer Reviewed
No
Funding Sources
National Institutes of Health
DK015600-18
National Institutes of Health
1ROIGM082843
National Institutes of Health
U01HB004271
Method Citation

Chen, Z.-X., Sturgill, D., Qu, J., Jiang, H., Park, S., Boley, N., Suzuki, A. M., Fletcher, A. R., Plachetzki, D. C., FitzGerald, P. C., Artieri, C. G., Atallah, J., Barmina, O., Brown, J. B., Blankenburg, K. P., Clough, E., Dasgupta, A., Gubbala, S., Han, Y., … Richards, S. (2014). Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Research, 24(7), 1209-1223. https://doi.org/10.1101/gr.159384.113
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1523397
Product Type
Dataset
Related Content
Drosophila bipectinata genome assembly Dbip02082011
FieldValue
OSTI Identifier
ISO Topic(s)
biota
National Agricultural Library Thesaurus Term
Drosophila
genomics
Biological Sciences
Insects and Entomology
Ag Data Commons Keywords
  • Genomics & Genetics
Program
Drosophila bipectinata
Organism project
Insects 5K – i5K

Suggested Citation:

(dataset) Richards, Stephen; Hughes, Daniel S.T. (2021). Drosophila bipectinata genome annotations v0.5.3 for genome assembly Dbip02082011. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1523397. Accessed 2023-12-08.