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BCM_Drho05162011.tar.gz (129.56 MB)

Drosophila rhopaloa genome assembly Drho05162011

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posted on 2024-02-16, 20:34 authored by Stephen Richards, Jiaxin Qu, Huaiyang Jiang, Matthew N. Batterton, Kerstin P. Blankenburg, Sai Gubbala, Yi Han, Joy C. Jayaseelan, Divya Kalra, Christie L. Kovar, Sandra L. Lee, Mingmei Li, Tittu Mathew, Mala Munidasa, Fiona Ongeri, Lora Perales, Ling-Ling Pu, Nehad Saada, Rebecca L. Thornton, Crystal B. Warner, Yuan-Qing Wu, Xiaoyan Zou, Steven E. Scherer, Kim C. Worley, Donna M. Muzny, Richard A. Gibbs

This research on Drosophila rhopaloa genomics is part of the Drosophila modENCODE project. The Baylor College of Medicine is studying the comparative genomics of eight species of Drosophila, including biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii. The genome assembly presented here is the pre-submission version of Drho_2.0, which is archived at the National Center for Biotechnology as GCA_000236305.2.


Resources in this dataset:

  • Resource Title: Drosophila rhopaloa genome assembly Drho05162011 fasta, agp and qual files .

    File Name: BCM_Drho05162011.tar.gz

    Resource Description: The attached tar.gz archive (BCM_Drho05162011.tar.gz) contains the following files: Drho05162011-contigs.fa. This file contains the sequence information of the contigs of the Drosophila rhopaloa Drho05162011 genome assembly. Drho05162011-genome.fa. This file contains the sequence information of the scaffolds of the Drosophila rhopaloa Drho05162011 genome assembly. Drho05162011-genome.agp. This file contains information linking the contigs and scaffolds for the Drosophila rhopaloa Drho05162011 genome assembly. A description of the agp format is available here: https://www.ncbi.nlm.nih.gov/assembly/agp/AGP_Specification/ Drho05162011-genome.fa.qual. This file contains quality scores for the Drosophila rhopaloa Drho05162011 genome assembly.

Funding

National Institutes of Health: DK015600-18

National Institutes of Health: 1ROIGM082843

National Institutes of Health: U01HB004271

History

Data contact name

Richards, Stephen

Data contact email

stephenr@BCM.EDU

Publisher

Ag Data Commons

Temporal Extent Start Date

2011-08-31

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[108.20286385728,14.496278144804]},"type":"Feature","properties":{}}]}

Geographic location - description

Vietnam

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

Drosophila; genomics; Biological Sciences; Insects and Entomology; genome assembly

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Richards, Stephen; Qu, Jiaxin; Jiang, Huaiyang; Batterton, Matthew N.; Blankenburg, Kerstin P.; Gubbala, Sai; Han, Yi; Jayaseelan, Joy C.; Kalra, Divya; Kovar, Christie L.; Lee, Sandra L.; Li, Mingmei; Mathew, Tittu; Munidasa, Mala; Ongeri, Fiona; Perales, Lora; Pu, Ling-Ling; Saada, Nehad; Thornton, Rebecca L.; Warner, Crystal B.; Wu, Yuan-Qing; Zou, Xiaoyan; Scherer, Steven E.; Worley, Kim C.; Muzny, Donna M.; Gibbs, Richard A. (2021). Drosophila rhopaloa genome assembly Drho05162011. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1523467

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    Categories

    Keywords

    i5kDrosophilaInsects

    Licence

    U.S. Public Domain

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