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Ephemera danica manual annotations on genome assembly Edan_1.0

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posted on 2023-12-18, 18:22 authored by Panagiotis Provataris, Hugh M. Robertson, Jeffery Jones, Oliver Niehuis, Agnes Southgate, Seung-Joon Ahn

This dataset presents manual annotations of Ephemera danica genome annotations v0.5.3 and genome assembly v1.0. Manual annotations were performed by individual annotators in the Apollo software at the i5k Workspace@NAL, and QC'd via the GFF3toolkit software and manual inspection. Manual annotations are presented here on the original coordinate system of genome assembly v1.0.


Resources in this dataset:

  • Resource Title: Ephemera danica manual annotations on genome assembly Edan_1.0 .

    File Name: ephdan_manual_annotations.tar.gz

    Resource Description: The attached tar.gz archive (ephdan_manual_annotations.tar.gz) contains the following files: - ephdan_manual_annotations_cds.fa: CDS sequences of the Ephemera danica manual annotations. - ephdan_manual_annotations.gff: GFF3 file of the Ephemera danica manual annotations. - ephdan_manual_annotations_pep.fa: Protein sequences of the Ephemera danica manual annotations. - ephdan_manual_annotations_trans.fa: RNA sequences of the Ephemera danica manual annotations.

Funding

National Human Genome Research Institute: U54 HG003273

History

Data contact name

Poelchau, Monica

Data contact email

monica.poelchau@usda.gov

Publisher

Ag Data Commons

Theme

  • Not specified

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; Ephemera danica; genome assembly; genome

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Provataris, Panagiotis; Robertson, Hugh M.; Jones, Jeffery; Niehuis, Oliver; Southgate, Agnes; Ahn, Seung-Joon (2020). Ephemera danica manual annotations on genome assembly Edan_1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1518587

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    Categories

    Keywords

    genome annotationEphemera danica

    Licence

    CC BY-SA 4.0

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