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Ephemera danica Official Gene Set ephdan_OGSv1.0

This dataset presents the Ephemera danica Official Gene Set (OGS) v1.0. The OGS is an integration of automatic gene predictions from Ephemera danica genome annotations v0.5.3, with manual annotations by the research community, performed via the Apollo manual curation software. Manual and automated annotations were lifted over from genome assembly Ephemera danica genome assembly v1.0 to genome assembly Edan_2.0 using the coordinates_conversion and remap-gff3 programs.

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FieldValue
Tags
genome annotation
Ephemera danica
Modified
2021-01-15
Release Date
2020-04-27
Identifier
cac417ac-661a-48e0-ad91-0c6de93dff39
Publisher
Ag Data Commons
License
Creative Commons Attribution Share-Alike
Contact Name
Poelchau, Monica
Contact Email
monica.poelchau@usda.gov
Public Access Level
Public
Extended Metadata: 
FieldValue
Authors
Provataris, Panagiotis (Scopus Author ID)
Robertson, Hugh M. (ORCID)
Jones, Jeffery (Scopus Author ID)
Niehuis, Oliver (ORCID)
Southgate, Agnes (Scopus Author ID)
Ahn, Seung-Joon (ORCID)
Chiang, Li-Mei (Scopus Author ID)
Poelchau, Monica (ORCID)
Hughes, Daniel S.T. (Scopus Author ID)
Richards, Stephen (ORCID)
Peer Reviewed
No
Equipment or Software Used
GFF3toolkit software
Apollo manual curation software
remap-gff3 software
coordinates_conversion software
Funding Sources
National Human Genome Research Institute
U54 HG003273
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1518589
Product Type
Dataset
Related Content
Ephemera danica genome assembly v1.0
Ephemera danica genome annotations v0.5.3
Ephemera danica manual annotations on genome assembly Edan_1.0
FieldValue
OSTI Identifier
ISO Topic(s)
biota
National Agricultural Library Thesaurus Term
genomics
Ephemera danica
genes
prediction
genome assembly
Ag Data Commons Keywords
  • Genomics & Genetics
  • Genome
  • Genome annotation
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
Program
Ephemera danica
Organism project
Insects 5K – i5K

Suggested Citation:

(dataset) Provataris, Panagiotis; Robertson, Hugh M.; Jones, Jeffery; Niehuis, Oliver; Southgate, Agnes; Ahn, Seung-Joon; Chiang, Li-Mei; Poelchau, Monica; Hughes, Daniel S.T.; Richards, Stephen (2020). Ephemera danica Official Gene Set ephdan_OGSv1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1518589. Accessed 2023-09-28.