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euraff_BCM_version_0.5.3.tar.gz (159.19 MB)

Eurytemora affinis complex (Atlantic clade) genome annotations v0.5.3

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posted on 2024-02-13, 12:54 authored by Carol E. Lee, Daniel S.T. Hughes, Stephen Richards

This dataset presents the Eurytemora affinis complex (Atlantic clade) gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Eurytemora affinis complex (Atlantic clade) genome assembly 1.0. If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use.


Resources in this dataset:

  • Resource Title: Eurytemora affinis complex (Atlantic clade) genome annotations v0.5.3.

    File Name: euraff_BCM_version_0.5.3.tar.gz

    Resource Description: The attached tar.gz archive (EAFF_BCM_version_0.5.3.tar.gz) contains the following files:

    EAFF.CDS.fna. CDS sequences of Eurytemora affinis complex (Atlantic clade) genome annotations v0.5.3.

    EAFF.faa. Amino acid sequences of Eurytemora affinis complex (Atlantic clade) genome annotations v0.5.3.

    EAFF.fna. cDNA sequences of Eurytemora affinis complex (Atlantic clade) genome annotations v0.5.3.

    EAFF.Models.gff3. Gff3 of all gene predictions of Eurytemora affinis complex (Atlantic clade) genome annotations v0.5.3.

    EAFF.Analysis.gff3 Gff3 of all evidence contributing to Eurytemora affinis complex (Atlantic clade) genome annotations v0.5.3.

Funding

National Human Genome Research Institute: U54 HG003273

History

Data contact name

Lee, Carol

Data contact email

carollee@wisc.edu

Publisher

Ag Data Commons

Temporal Extent Start Date

2016-01-01

Temporal Extent End Date

2017-12-31

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-69.21,48.01]},"type":"Feature","properties":{}}]}

Geographic location - description

Canada: Baie de L'Isle Verte, St. Lawrence estuary (salt marsh), Quebec

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; genes; genome assembly; Eurytemora affinis

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Lee, Carol E.; Hughes, Daniel S.T.; Richards, Stephen (2021). Eurytemora affinis complex (Atlantic clade) genome annotations v0.5.3. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1522904

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    Categories

    Keywords

    genome annotationEurytemora affinisEurytemora affinis complex (Atlantic clade)

    Licence

    CC BY-SA 4.0

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