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fraocc_BCM_version_0.5.3.tar.gz (170.74 MB)

Frankliniella occidentalis genome annotations v0.5.3

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posted on 2024-02-15, 17:17 authored by Daniel S.T. Hughes, Stephen Richards, Dorith RotenbergDorith Rotenberg

This dataset presents the Frankliniella occidentalis gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Frankliniella occidentalis genome assembly 1.0. If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use.


Resources in this dataset:

  • Resource Title: Frankliniella occidentalis genome annotations v0.5.3 for genome assembly v1.0.

    File Name: fraocc_BCM_version_0.5.3.tar.gz

    Resource Description: The attached tar.gz archive (FOCC_BCM_version_0.5.3.tar.gz) contains the following files:

    FOCC.CDS.fna. CDS sequences of Frankliniella occidentalis genome annotations v0.5.3.

    FOCC.faa. Amino acid sequences of Frankliniella occidentalis genome annotations v0.5.3.

    FOCC.fna. cDNA sequences of Frankliniella occidentalis genome annotations v0.5.3.

    FOCC.Models.gff3. Gff3 of all gene predictions of Frankliniella occidentalis genome annotations v0.5.3.

    FOCC.Analysis.gff3 Gff3 of all evidence contributing to Frankliniella occidentalis genome annotations v0.5.3.

Funding

National Human Genome Research Institute: U54 HG003273

History

Data contact name

Rotenberg, Dorith

Data contact email

drotenb@ncsu.edu

Publisher

Ag Data Commons

Theme

  • Not specified

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genome assembly; nucleotide sequences; sequence analysis; Frankliniella occidentalis; genes

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Hughes, Daniel S.T.; Richards, Stephen; Rotenberg, Dorith (2019). Frankliniella occidentalis genome annotations v0.5.3. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1503959

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