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Frankliniella occidentalis genome assembly v1.0

The Baylor College of Medicine has sequenced and annotated the Frankliniella occidentalis genome as part of the i5k pilot project. This dataset presents the Frankliniella occidentalis genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use.

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FieldValue
Tags
Organism project
i5k
arthropods
Frankliniella occidentalis
Modified
2021-11-19
Release Date
2019-06-19
Identifier
daadf2f6-3c5a-42db-aa0f-9a9bfd8d15e9
License
Creative Commons Attribution Share-Alike
Contact Name
Rotenberg, Dorith
Contact Email
drotenb@ncsu.edu
Public Access Level
Public
Extended Metadata: 
FieldValue
Authors
Rotenberg, Dorith (ORCID)
Gibbs, Richard A. (Scopus Author ID)
Worley, Kim C. (ORCID)
Murali, Shwetha C. (Scopus Author ID)
Lee, Sandra L. (ORCID)
Muzny, Donna M. (ORCID)
Hughes, Daniel S.T. (Scopus Author ID)
Chao, Hsu (Scopus Author ID)
Dinh, Huyen (ORCID)
Doddapaneni, Harshavardhan (ORCID)
Qu, Jiaxin (ORCID)
Dugan-Perez, Shannon (ORCID)
Han, Yi (ORCID)
Richards, Stephen (ORCID)
Peer Reviewed
No
Funding Sources
National Human Genome Research Institute
U54 HG003273
Related Articles

Rotenberg, D., Baumann, A. A., Ben-Mahmoud, S., Christiaens, O., Dermauw, W., Ioannidis, P., Jacobs, C. G., Vargas Jentzsch, I. M., Oliver, J. E., Poelchau, M. F., Rajarapu, S. P., Schneweis, D. J., Snoeck, S., Taning, C. N., Wei, D., Widana-Gamage, S. M. K., Hughes, D. S., Murali, S. C., Bailey, S., Bejerman, N. E., Holmes, C. J., Jennings, E. C., Rosendale, A. J., Rosselot, A., Hervey, K., Schneweis, B. A., Cheng, S., Childers, C., Simão, F. A., Dietzgen, R. G., Chao, H., Dinh, H., Doddapaneni, H., Dugan, S., Han, Y., Lee, S. L., Muzny, D. M., Qu, J., Worley, K. C., Benoit, J. B., Friedrich, M., Jones, J. W., Panfilio, K. A., Park, Y., Robertson, H. M., Smagghe, G., Ullman, D. E., van der Zee, M., Van Leeuwen, T., Veenstra, J. A., Waterhouse, R. M., Weirauch, M. T., Werren, J. H., Whitfield, A. E., Zdobnov, E. M., Gibbs, R. A., & Richards, S. (2020). Genome-enabled insights into the biology of thrips as crop pests. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2020.02.12.941716

Han, J., & Rotenberg, D. (2021). Integration of transcriptomics and network analysis reveals co-expressed genes in Frankliniella occidentalis larval guts that respond to tomato spotted wilt virus infection. BMC Genomics, 22(1). https://doi.org/10.1186/s12864-021-08100-4
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1503960
Product Type
Dataset
Related Content
Frankliniella occidentalis Official Gene Set OGSv1.0
Frankliniella occidentalis genome annotations v0.5.3
FieldValue
OSTI Identifier
ISO Topic(s)
biota
National Agricultural Library Thesaurus Term
genome assembly
nucleotide sequences
sequence analysis
Frankliniella occidentalis
Ag Data Commons Keywords
  • Genomics & Genetics
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
  • Genome
  • Genome assembly
Program
Insects 5K – i5K
Organism project
Frankliniella occidentalis

Suggested Citation:

(dataset) Rotenberg, Dorith; Gibbs, Richard A.; Worley, Kim C.; Murali, Shwetha C.; Lee, Sandra L.; Muzny, Donna M.; Hughes, Daniel S.T.; Chao, Hsu; Dinh, Huyen; Doddapaneni, Harshavardhan; Qu, Jiaxin; Dugan-Perez, Shannon; Han, Yi; Richards, Stephen (2019). Frankliniella occidentalis genome assembly v1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1503960. Accessed 2023-03-27.