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Frankliniella occidentalis Official Gene Set OGSv1.1

The Frankliniella occidentalis Official Gene Set fraocc_OGSv1.1 is an update of OGSv1.0 (https://doi.org/10.15482/USDA.ADC/1504029). OGSv1.0 is an integration of automatic gene predictions from the Baylor College of Medicine's i5k pilot project, with manual annotations by the research community (performed via the Apollo manual curation software, http://genomearchitect.org/). OGSv1.1 was updated from OGSv1.0 (https://doi.org/10.15482/USDA.ADC/1504029) to the coordinates of genome assembly GCA_000697945.4 (https://www.ncbi.nlm.nih.gov/assembly/GCA_000697945.4) using https://github.com/NAL-i5K/coordinates_conversion/.

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FieldValue
Tags
Frankliniella occidentalis
Western flower thrips
genome annotation
Modified
2022-05-26
Release Date
2020-01-13
Identifier
928f50ae-02a6-4b25-aedd-b04f93e2a025
Spatial / Geographical Coverage Area
POLYGON ((-534.375 -82.676284978349, -534.375 85.051128779807, -165.9375 85.051128779807, -165.9375 -82.676284978349))
Publisher
Ag Data Commons
Temporal Coverage
January 1, 2019
License
Creative Commons Attribution Share-Alike
Contact Name
Rotenberg, Dorith
Contact Email
drotenb@ncsu.edu
Public Access Level
Public
Extended Metadata: 
FieldValue
Authors
Rotenberg, Dorith (ORCID)
Robertson, Hugh M. (ORCID)
Oliver, Jonathan E. (Scopus Author ID)
Benoit, Joshua B. (ORCID)
Snoeck, Simon (Scopus Author ID)
Baumann, Aaron A. (ORCID)
Mahmoud, Sulley Ben (ORCID)
Veenstra, Jan A. (ORCID)
Jacobs, Chris G.C. (ORCID)
Park, Yoonseong (Scopus Author ID)
Panfilio, Kristen A. (ORCID)
Widana Gamage, Shirani M.K. (Scopus Author ID)
Ahn, Seung-Joon (ORCID)
Vargas Jentzsch, Iris M. (ORCID)
Jennings, Emily C. (ORCID)
Szuter, Elise M. (Scopus Author ID)
Christiaens, Olivier (Scopus Author ID)
Scanlan, Jack (ORCID)
Taning, Clauvis Nji Tizi (Scopus Author ID)
Martynov, Alexander (ORCID)
Bejerman, Nicolás E. (Scopus Author ID)
Nair, Ajay (Scopus Author ID)
Jones, Jeffery W. (Scopus Author ID)
Friedrich, Markus (ORCID)
van der Zee, Maurijn (ORCID)
Dearden, Peter (ORCID)
Minakuchi, Chieka (ORCID)
Armisén, David (ORCID)
Schneweis, Derek J. (Scopus Author ID)
Melo, Fernando Lucas (ORCID)
Poelchau, Monica (ORCID)
Dermauw, Wannes (Scopus Author ID)
Hughes, Daniel S.T. (Scopus Author ID)
Richards, Stephen (ORCID)
Didion, Elise M. (ORCID)
Holmes, Christopher J. (ORCID)
Rosendale, Andrew J. (ORCID)
Rosselot, Andrew (Scopus Author ID)
Dolan, Amanda (Scopus Author ID)
Whitfield, Anna E. (ORCID)
Ullman, Diane E. (ORCID)
Dietzgen, Ralf G. (ORCID)
Smagghe, Guy (ORCID)
Van Leeuwen, Thomas (ORCID)
Warren, John H. (ORCID)
Peer Reviewed
No
Funding Sources
National Human Genome Research Institute
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1504029
Product Type
Dataset
Related Content
Frankliniella occidentalis genome assembly v1.0
Frankliniella occidentalis genome annotations v0.5.3
QC and OGS Generation Pipeline by i5K Workspace@NAL
IsVersionOf: Frankliniella occidentalis Official Gene Set OGSv1.0
Coordinates conversion pipeline
FieldValue
OSTI Identifier
ISO Topic(s)
biota
National Agricultural Library Thesaurus Term
genomics
Frankliniella occidentalis
genes
prediction
bacterial contamination
Ag Data Commons Keywords
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
Program
Frankliniella occidentalis
Organism project
Insects 5K – i5K

Suggested Citation:

(dataset) Rotenberg, Dorith; Robertson, Hugh M.; Oliver, Jonathan E.; Benoit, Joshua B.; Snoeck, Simon; Baumann, Aaron A.; Mahmoud, Sulley Ben; Veenstra, Jan A.; Jacobs, Chris G.C.; Park, Yoonseong; Panfilio, Kristen A.; Widana Gamage, Shirani M.K.; Ahn, Seung-Joon; Vargas Jentzsch, Iris M.; Jennings, Emily C.; Szuter, Elise M.; Christiaens, Olivier; Scanlan, Jack; Taning, Clauvis Nji Tizi; Martynov, Alexander; Bejerman, Nicolás E.; Nair, Ajay; Jones, Jeffery W.; Friedrich, Markus; van der Zee, Maurijn; Dearden, Peter; Minakuchi, Chieka; Armisén, David; Schneweis, Derek J.; Melo, Fernando Lucas; Poelchau, Monica; Dermauw, Wannes; Hughes, Daniel S.T.; Richards, Stephen; Didion, Elise M.; Holmes, Christopher J.; Rosendale, Andrew J.; Rosselot, Andrew; Dolan, Amanda; Whitfield, Anna E.; Ullman, Diane E.; Dietzgen, Ralf G.; Smagghe, Guy; Van Leeuwen, Thomas; Warren, John H. (2020). Frankliniella occidentalis Official Gene Set OGSv1.1. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1504029. Accessed 2023-10-01.