We present the annotation results of 15 arthropod proteomes using an open source, open access and containerized pipeline for genome-scale functional annotation of insect proteomes and apply it to a diverse range of arthropod species. You can find more information about the pipeline at our readthedocs site. The files for each genome include GOanna, InterproScan and KOBAS predictions.
Arthropod genomes selected for this study and their assembly and annotation statistics.
- Apis Mellifera (honey bee)
- Drosophila melanogaster (fruit fly)
- Tribolium castaneum (red flour beetle)
- Latrodectus hesperus (Western black widow spider)
- Limnephilus lunatus (caddisfly)
- Oncopeltus fasciatus (Large milkweed bug)
- Homalodisca vitripennis (Glassy-winged sharpshooter)
- Eurytemora affinis (calanoid copepod)
- Agrilus planipennis (emerald ash borer)
- Copidosoma floridanum (parasitoid wasp)
- Athalia rosae (turnip sawfly)
- Ceratitis capitata (Mediterranean fruit fly)
- Cimex lectularius (Cimicidae bed bug)
- Varroa destructor(parasitic mite)
- Diaphorina citri (Asian citrus psyllid)
- Cimex lectularius (Cimicidae bed bug) annotationData
Functional annotation for Clec-OGSv1.2 protein set
MD5:Explore Data158.17 MB - Tribolium castaneum (red flour beetle) annotationData
Functional annotation for TCAS_OGS_v3 protein set
MD5:Explore Data233.09 MB - Drosophila melanogaster (fruit fly) annotationData
Functional annotation for DMEL_r6.38 protein set
MD5:Explore Data428.86 MB - Varroa destructor (parasitic mite) annotationData
Functional annotation for NCBI Varroa destructor Annotation Release 100...
MD5:Explore Data382.67 MB - Oncopeltus fasciatus (Large milkweed bug) annotationData
Functional annotation for oncfas_OGSv1.2 protein set
MD5:Explore Data164.94 MB - Apis Mellifera (honey bee) annotationData
Functional annotation for OGSv3.3 protein set from Amel_4.5 genome (...
MD5:Explore Data166.31 MB - Homalodisca vitripennis (Glassy-winged sharpshooter) annotationData
Functional annotation for HVIT-BCM_version_0.5.3 protein set based on Hvit_1...
MD5:Explore Data242.76 MB - Limnephilus lunatus (caddisfly) annotationData
Functional annotation for LLUN-BCM_version_0.5.3 protein set from Llun_1.0...
MD5:Explore Data125.38 MB - Latrodectus hesperus (Western black widow spider) annotationData
Functional annotation for LHES-BCM_version_0.5.3 protein set from Lhes_1.0...
MD5:Explore Data122.49 MB - Eurytemora affinis (calanoid copepod) annotationData
Functional annotation for EAFF-BCM_version_0.5.3 protein set from Eaff_1.0...
MD5:Explore Data196.33 MB - Copidosoma floridanum (parasitoid wasp) annotationData
Functional annotation for CFLO-BCM_version_0.5.3 protein set based on Cflo_1...
MD5:Explore Data183 MB - Ceratitis capitata (Mediterranean fruit fly) annotationData
Functional annotation for Ccap-OGSv1 protein set based on Ccap_1.1 assembly...
MD5:Explore Data179.1 MB - Athalia rosae (turnip sawfly) annotationData
Functional annotation for AROS-BCM_version_0.5.3 protein set based on Aros_1...
MD5:Explore Data356.3 MB - Agrilus planipennis (emerald ash borer) annotationData
Functional annotation for APLA-BCM_version_0.5.3 protein set based on Apla_1...
MD5:Explore Data164.36 MB
Field | Value |
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Tags | |
Modified | 2022-09-22 |
Release Date | 2021-07-07 |
Identifier | 7a6a05b8-8652-4a93-b05d-38f13e239952 |
Spatial / Geographical Coverage Area | POLYGON ((-125.33203125 30.654452824401, -125.33203125 48.848450835898, -74.35546875 48.848450835898, -74.35546875 30.654452824401)) |
Publisher | Ag Data Commons |
Temporal Coverage | July 6, 2021 |
License | |
Contact Name | Saha, Surya |
Contact Email | |
Public Access Level | Public |
Program Code | 005:040 - Department of Agriculture - National Research |
Bureau Code | 005:18 - Agricultural Research Service |