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Genetic fingerprinting of 184 Aspergillus from Ethiopia isolated in 2015 from peanut seeds, raw data

Genetic fingerprinting of 184 Aspergillus section Flavi isolates from Ethiopia screened with 24 Insertion/Deletion markers located within the aflatoxin-biosynthesis gene cluster. Each file name contains in this order: isolate number, marker number, range of base pairs on the aflatoxin-biosynthesis cluster where the marker is located, and well position within the 384 microplate used for capillary electrophoresis.

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FieldValue
Tags
Ethiopia
fingerprinting
InDel
markers
molecular markers
aflatoxin
Aspergillus
np301
Modified
2022-09-29
Release Date
2021-02-09
Identifier
398fb370-7501-4e59-9d50-4f7a0fa6cb9a
Spatial / Geographical Coverage Area
POINT (40.520874056965 8.7262000404798)
POINT (42.009521517903 9.4584540171235)
POINT (42.152343783528 9.388006520754)
POLYGON ((40.448913574219 8.7652910225094, 41.997985839844 9.5299706246919, 42.250671386719 9.4107681185651, 40.492858886719 8.7001372206886))
Publisher
Ag Data Commons
Spatial / Geographical Coverage Location
Oromiya, Ethiopia
Temporal Coverage
July 2, 2015
License
U.S. Public Domain
Contact Name
Renee Arias
Contact Email
Renee.Arias@USDA.GOV
Public Access Level
Public
Program Code
005:040 - Department of Agriculture - National Research
Bureau Code
005:18 - Agricultural Research Service
Extended Metadata: 
FieldValue
Authors
Arias, Renee S. (ORCID)
Mohammed, Abdi
Peer Reviewed
No
Intended Use
These are the raw data of genetic fingerprinting 184 Isolates of the fungi Aspergillus flavus and Aspergillus parasiticus that were found colonizing peanut seeds in the Oromiya region of Ethiopia. The complete analysis of the data will be submitted as a manuscript to the scientific journal BMC Microbiology. Making the raw data available to the public is a requirement of that journal, and makes it feasible for any reader who wishes to re-analyze them, to have access to the original source of information.
Use Limitations
The data can be used in the future to compare them with newly collected isolates of these fungi; and thus, detect possible changes in population genetics that result from the use of pesticides, or biological control in those environments. Data are in .FSA format, were generated with Applied Biosystems DNA Analyzer 3730, and can be easily processed using the software GeneMapper v. 4.1 or higher.
Equipment or Software Used
Applied Biosystems DNA Analyzer 3730, manufacturer's software GeneMapper 4.1
Funding Sources
Agricultural Research Service
6604-21000-003-00D
Primary Article

Arias, R. S., Mohammed, A., Orner, V. A., Faustinelli, P. C., Lamb, M. C., & Sobolev, V. S. (2020). Sixteen Draft Genome Sequences Representing the Genetic Diversity of Aspergillus flavus and Aspergillus parasiticus Colonizing Peanut Seeds in Ethiopia. Microbiology Resource Announcements, 9(30). https://doi.org/10.1128/mra.00591-20

AgID: 7071276
Related Articles

Mohammed, A., Chala, A., Dejene, M., Fininsa, C., Hoisington, D. A., Sobolev, V. S., & Arias, R. S. (2016). <i>Aspergillus</i>and aflatoxin in groundnut (<i>Arachis hypogaea</i>L.) and groundnut cake in Eastern Ethiopia. Food Additives &Amp; Contaminants: Part B, 9(4), 290-298. https://doi.org/10.1080/19393210.2016.1216468

AgID: 5582132
Method Citation

Faustinelli, P. C., Palencia, E. R., Sobolev, V. S., Horn, B. W., Sheppard, H. T., Lamb, M. C., Wang, X. M., Scheffler, B. E., Martinez Castillo, J., & Arias, R. S. (2017). Study of the genetic diversity of the aflatoxin biosynthesis cluster in <i>Aspergillus</i> section <i>Flavi</i> using insertion/deletion markers in peanut seeds from Georgia, USA. Mycologia, 109(2), 200-209. https://doi.org/10.1080/00275514.2017.1307095

AgID: 6955423
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1520771
Product Type
Dataset
Cites Other Datasets
Genomes of representative Aspergillus isolates from the dataset
FieldValue
OSTI Identifier
ISO Topic(s)
biota
farming
National Agricultural Library Thesaurus Term
DNA fingerprinting
Aspergillus
Ethiopia
peanuts
seeds
multigene family
capillary electrophoresis
genetic markers
aflatoxins
Ag Data Commons Keywords
  • Plants & Crops
  • Agricultural Products
  • Plants
  • Leguminous crops
  • Peanuts
  • Agricultural Products
  • Plants
  • Leguminous crops
  • Agricultural Products
  • Plants
  • Agricultural Products
  • Genomics & Genetics
  • Food & Nutrition
  • Food safety
  • Food & Nutrition

Suggested Citations:

(original article) Arias, R. S., Mohammed, A., Orner, V. A., Faustinelli, P. C., Lamb, M. C., & Sobolev, V. S. (2020). Sixteen Draft Genome Sequences Representing the Genetic Diversity of Aspergillus flavus and Aspergillus parasiticus Colonizing Peanut Seeds in Ethiopia. Microbiology Resource Announcements, 9(30). https://doi.org/10.1128/mra.00591-20

(dataset) Arias, Renee S.; Mohammed, Abdi (2021). Genetic fingerprinting of 184 Aspergillus from Ethiopia isolated in 2015 from peanut seeds, raw data. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1520771. Accessed 2023-09-25.