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GENOSIM

The genosim package simulates genotypes, breeding values, and phenotypes; simulates DNA sequence read depth (numbers of A and B alleles); and resolves SNP conflicts between parent and offspring genotypes.

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FieldValue
Modified
2022-02-08
Release Date
2019-05-02
Identifier
0c9fa00a-c039-477a-8272-361965b6223f
Publisher
United States Department of Agriculture
License
Creative Commons CCZero
Contact Name
Hubbard, Suzanne
Contact Email
suzanne.hubbard@usda.gov
Public Access Level
Public
Program Code
005:040 - Department of Agriculture - National Research
Bureau Code
005:18 - Agricultural Research Service
Extended Metadata: 
FieldValue
Authors
VanRaden, Paul M. (ORCID)
Peer Reviewed
No
Funding Sources
Agricultural Research Service
Primary Article

VanRaden, P. (2008). Efficient Methods to Compute Genomic Predictions. Journal of Dairy Science, 91(11), 4414-4423. https://doi.org/10.3168/jds.2007-0980

AgID: 27183
Product Type
Model
Related Content
GENOSIM information and download page
FINDMAP
FINDHAP
ConvertCufflinksToExcel
MTDFREML: Multiple-trait derivative-free restricted maximum likelihood
BESTPRED: Best Prediction Programs
MTGSAM: Multiple-Trait Gibbs Sampler for Animal Models
FieldValue
ISO Topic(s)
biota
National Agricultural Library Thesaurus Term
computer software
models
single nucleotide polymorphism
breeding value
phenotype
nucleotide sequences
progeny
Ag Data Commons Keywords
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics

Suggested Citations:

(original article) VanRaden, P. (2008). Efficient Methods to Compute Genomic Predictions. Journal of Dairy Science, 91(11), 4414-4423. https://doi.org/10.3168/jds.2007-0980

(dataset) VanRaden, Paul M. (2019). GENOSIM. United States Department of Agriculture. https://data.nal.usda.gov/dataset/genosim. Accessed 2023-12-07.