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Gerris buenoi Official Gene set v1.0

The Gerris buenoi genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The Gerris buenoi research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.0. The OGS is an integration of automatic gene predictions from Maker (performed by Dan Hughes at Baylor College of Medicine) with manual annotations by the research community (done via the Apollo manual annotation software).

If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use

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FieldValue
Tags
insects
i5k
Gerris buenoi
Modified
2019-08-05
Release Date
2018-03-06
Identifier
ec27e1c9-fa37-4338-82fb-aeab91982d13
License
Creative Commons Attribution
Contact Name
Armisén, David
Contact Email
davidarmisen@gmail.com
Public Access Level
Public
Extended Metadata: 
FieldValue
Authors
Armisén, David (ORCID)
Rajakumar, Rajendhran (ORCID)
Friedrich, Markus (ORCID)
Benoit, Joshua B. (ORCID)
Robertson, Hugh M. (ORCID)
Panfilio, Kristen A. (ORCID)
Ahn, Seung-Joon (ORCID)
Poelchau, Monica (ORCID)
Chao, Hsu (Scopus Author ID)
Dinh, Huyen (ORCID)
Doddapaneni, HarshaVardhan (ORCID)
Dugan-Perez, Shannon (ORCID)
Gibbs, Richard A. (Scopus Author ID)
Hughes, Daniel S.T. (Scopus Author ID)
Han, Yi (ORCID)
Lee, Sandra L. (ORCID)
Murali, Shwetha C. (Scopus Author ID)
Muzny, Donna M. (ORCID)
Qu, Jiaxin (ORCID)
Worley, Kim C. (ORCID)
Munoz-Torres, Monica (ORCID)
Abouheif, Ehab (Scopus Author ID)
Bonneton, François (ORCID)
Chen, Travis (ORCID)
Chiang, Li-Mei (Scopus Author ID)
Childers, Christopher (ORCID)
Cridge, Andrew (ORCID)
Crumière, Antonin (ORCID)
Decaras, Amélie (Scopus Author ID)
Didion, Elise (ORCID)
Duncan, Elizabeth J. (ORCID)
Elpidina, Elena (ORCID)
Fave, Marie Julie (Scopus Author ID)
Finet, Cedric (Scopus Author ID)
Jacobs, Chris G.C. (ORCID)
Jarvela, Alys (ORCID)
Jennings, Emily C. (ORCID)
Jones, Jeffery W. (Scopus Author ID)
Lesoway, Maryna (ORCID)
Lovegrove, Mackenzie R. (Scopus Author ID)
Martynov, Alexander (ORCID)
Oppert, Brenda (ORCID)
Lilico-Ouachour, Angelica (Scopus Author ID)
Rajakumar, Arjuna (Scopus Author ID)
Refki, Peter N. (Scopus Author ID)
Rosendale, Andrew J. (ORCID)
Santos, Maria Emila (Scopus Author ID)
Toubiana, William (Scopus Author ID)
van der Zee, Maurijn (ORCID)
Vargas Jentzsch, Iris M. (ORCID)
Vargas Lowman, Aidamalia (Scopus Author ID)
Viala, Sèverine (ORCID)
Richards, Stephen (ORCID)
Khila, Abderrahman (ORCID)
Peer Reviewed
No
Funding Sources
European Research Council
616346
National Human Genome Research Institute
U54 HG003273
Deutsche Forschungsgemeinschaft
PA 2044/1-1
Deutsche Forschungsgemeinschaft
SFB 680
Related Articles

Armisén, D., Rajakumar, R., Friedrich, M., Benoit, J. B., Robertson, H. M., Panfilio, K. A., Ahn, S.-J., Poelchau, M. F., Chao, H., Dinh, H., Doddapaneni, H., Dugan, S., Gibbs, R. A., Hughes, D. S., Han, Y., Lee, S. L., Murali, S. C., Muzny, D. M., Qu, J., Worley, K. C., Munoz-Torres, M., Abouheif, E., Bonneton, F., Chen, T., Chiang, L.-M., Childers, C. P., Cridge, A. G., Crumière, A. J. J., Decaras, A., Didion, E. M., Duncan, E., Elpidina, E. N., Favé, M.-J., Finet, C., Jacobs, C. G., Jarvela, A., Jennings, E. J., Jones, J. W., Lesoway, M. P., Lovegrove, M., Martynov, A., Oppert, B., Lillico-Ouachour, A., Rajakumar, A., Refki, P. N., Rosendale, A. J., Santos, M. E., Toubiana, W., van der Zee, M., Vargas Jentzsch, I. M., Lowman, A. V., Viala, S., Richards, S., & Khila, A. (2018). The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water. Cold Spring Harbor Laboratory. https://doi.org/10.1101/242230
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1423873
Product Type
Dataset
Related Content
Gerris buenoi genome annotations v0.5.3
Gerris buenoi genome assembly v1.0
FieldValue
OSTI Identifier
ISO Topic(s)
biota
National Agricultural Library Thesaurus Term
genomics
genes
prediction
sequence analysis
nucleotide sequences
Gerris buenoi
Ag Data Commons Keywords
  • Genomics & Genetics
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
  • Genome
  • Genome annotation
Program
Insects 5K – i5K
Organism project
Gerris buenoi

Suggested Citation:

(dataset) Armisén, David; Rajakumar, Rajendhran; Friedrich, Markus; Benoit, Joshua B.; Robertson, Hugh M.; Panfilio, Kristen A.; Ahn, Seung-Joon; Poelchau, Monica; Chao, Hsu; Dinh, Huyen; Doddapaneni, HarshaVardhan; Dugan-Perez, Shannon; Gibbs, Richard A.; Hughes, Daniel S.T.; Han, Yi; Lee, Sandra L.; Murali, Shwetha C.; Muzny, Donna M.; Qu, Jiaxin; Worley, Kim C.; Munoz-Torres, Monica ; Abouheif, Ehab; Bonneton, François; Chen, Travis; Chiang, Li-Mei; Childers, Christopher; Cridge, Andrew; Crumière, Antonin; Decaras, Amélie; Didion, Elise; Duncan, Elizabeth J.; Elpidina, Elena; Fave, Marie Julie; Finet, Cedric; Jacobs, Chris G.C.; Jarvela, Alys; Jennings, Emily C.; Jones, Jeffery W.; Lesoway, Maryna; Lovegrove, Mackenzie R.; Martynov, Alexander; Oppert, Brenda; Lilico-Ouachour, Angelica; Rajakumar, Arjuna; Refki, Peter N.; Rosendale, Andrew J.; Santos, Maria Emila; Toubiana, William; van der Zee, Maurijn; Vargas Jentzsch, Iris M.; Vargas Lowman, Aidamalia; Viala, Sèverine; Richards, Stephen; Khila, Abderrahman (2018). Gerris buenoi Official Gene set v1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1423873. Accessed 2023-03-24.