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Halyomorpha halys genome assembly v1.0

The Baylor College of Medicine has sequenced and annotated the Halyomorpha halys genome as part of the i5k pilot project. This dataset presents the Halyomorpha halys genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use

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FieldValue
Tags
genome assembly
sequence analysis
Halyomorpha halys
Modified
2020-03-23
Release Date
2019-05-07
Identifier
7d32cb53-6492-45d0-bac2-964b9aabde9a
Publisher
Ag Data Commons
License
Creative Commons Attribution Share-Alike
Contact Name
Sparks, Michael
Contact Email
Michael.Sparks@ARS.USDA.GOV
Public Access Level
Public
Extended Metadata: 
FieldValue
Authors
Gundersen-Rindal, Dawn E. (ORCID)
Gibbs, Richard A. (Scopus Author ID)
Worley, Kim C. (ORCID)
Murali, Shwetha C. (Scopus Author ID)
Lee, Sandra L. (ORCID)
Muzny, Donna M. (ORCID)
Chao, Hsu (Scopus Author ID)
Dinh, Huyen (ORCID)
Doddapaneni, Harshavardhan (ORCID)
Qu, Jiaxin (ORCID)
Dugan-Perez, Shannon (ORCID)
Han, Yi (ORCID)
Richards, Stephen (ORCID)
Peer Reviewed
No
Funding Sources
National Human Genome Research Institute
U54 HG003273
Primary Article

Sparks, M. E., Bansal, R., Benoit, J. B., Blackburn, M. B., Chao, H., Chen, M., Cheng, S., Childers, C., Dinh, H., Doddapaneni, H. V., Dugan, S., Elpidina, E. N., Farrow, D. W., Friedrich, M., Gibbs, R. A., Hall, B., Han, Y., Hardy, R. W., Holmes, C. J., Hughes, D. S. T., Ioannidis, P., Cheatle Jarvela, A. M., Johnston, J. S., Jones, J. W., Kronmiller, B. A., Kung, F., Lee, S. L., Martynov, A. G., Masterson, P., Maumus, F., Munoz-Torres, M., Murali, S. C., Murphy, T. D., Muzny, D. M., Nelson, D. R., Oppert, B., Panfilio, K. A., Paula, D. P., Pick, L., Poelchau, M. F., Qu, J., Reding, K., Rhoades, J. H., Rhodes, A., Richards, S., Richter, R., Robertson, H. M., Rosendale, A. J., Tu, Z. J., Velamuri, A. S., Waterhouse, R. M., Weirauch, M. T., Wells, J. T., Werren, J. H., Worley, K. C., Zdobnov, E. M., & Gundersen-Rindal, D. E. (2020). Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest. BMC Genomics, 21(1). https://doi.org/10.1186/s12864-020-6510-7
Method Citation

Sparks, M. E., Bansal, R., Benoit, J. B., Blackburn, M. B., Chao, H., Chen, M., Cheng, S., Childers, C., Dinh, H., Doddapaneni, H. V., Dugan, S., Elpidina, E. N., Farrow, D. W., Friedrich, M., Gibbs, R. A., Hall, B., Han, Y., Hardy, R. W., Holmes, C. J., Hughes, D. S. T., Ioannidis, P., Cheatle Jarvela, A. M., Johnston, J. S., Jones, J. W., Kronmiller, B. A., Kung, F., Lee, S. L., Martynov, A. G., Masterson, P., Maumus, F., Munoz-Torres, M., Murali, S. C., Murphy, T. D., Muzny, D. M., Nelson, D. R., Oppert, B., Panfilio, K. A., Paula, D. P., Pick, L., Poelchau, M. F., Qu, J., Reding, K., Rhoades, J. H., Rhodes, A., Richards, S., Richter, R., Robertson, H. M., Rosendale, A. J., Tu, Z. J., Velamuri, A. S., Waterhouse, R. M., Weirauch, M. T., Wells, J. T., Werren, J. H., Worley, K. C., Zdobnov, E. M., & Gundersen-Rindal, D. E. (2020). Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest. BMC Genomics, 21(1). https://doi.org/10.1186/s12864-020-6510-7
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1503818
Product Type
Dataset
Related Content
Halyomorpha halys genome annotations v0.5.3
FieldValue
OSTI Identifier
ISO Topic(s)
biota
National Agricultural Library Thesaurus Term
genomics
Ag Data Commons Keywords
  • Genomics & Genetics
  • Genome
  • Genome assembly
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
Program
Halyomorpha halys
Organism project
Insects 5K – i5K

Suggested Citations:

(original article) Sparks, M. E., Bansal, R., Benoit, J. B., Blackburn, M. B., Chao, H., Chen, M., Cheng, S., Childers, C., Dinh, H., Doddapaneni, H. V., Dugan, S., Elpidina, E. N., Farrow, D. W., Friedrich, M., Gibbs, R. A., Hall, B., Han, Y., Hardy, R. W., Holmes, C. J., Hughes, D. S. T., Ioannidis, P., Cheatle Jarvela, A. M., Johnston, J. S., Jones, J. W., Kronmiller, B. A., Kung, F., Lee, S. L., Martynov, A. G., Masterson, P., Maumus, F., Munoz-Torres, M., Murali, S. C., Murphy, T. D., Muzny, D. M., Nelson, D. R., Oppert, B., Panfilio, K. A., Paula, D. P., Pick, L., Poelchau, M. F., Qu, J., Reding, K., Rhoades, J. H., Rhodes, A., Richards, S., Richter, R., Robertson, H. M., Rosendale, A. J., Tu, Z. J., Velamuri, A. S., Waterhouse, R. M., Weirauch, M. T., Wells, J. T., Werren, J. H., Worley, K. C., Zdobnov, E. M., & Gundersen-Rindal, D. E. (2020). Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest. BMC Genomics, 21(1). https://doi.org/10.1186/s12864-020-6510-7

(dataset) Gundersen-Rindal, Dawn E.; Gibbs, Richard A.; Worley, Kim C.; Murali, Shwetha C.; Lee, Sandra L.; Muzny, Donna M.; Chao, Hsu; Dinh, Huyen; Doddapaneni, Harshavardhan; Qu, Jiaxin; Dugan-Perez, Shannon; Han, Yi; Richards, Stephen (2019). Halyomorpha halys genome assembly v1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1503818. Accessed 2023-03-28.