The Baylor College of Medicine sequenced and annotated the Halyomorpha halys genome as part of the i5k pilot project. The H. halys research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.0.
This dataset presents the Halyomorpha halys Official Gene Set (OGS) v1.0. The OGS is an integration of automatic gene predictions from NCBI's eukaryotic annotation pipeline, NCBI Halyomorpha halys Annotation Release 100 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Halyomorpha_halys/100/; ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/696/795/GCF_000696795.1_H...), with manual annotations by the research community (performed via the Apollo manual curation software, http://genomearchitect.org/).
Manual annotations performed by the community were downloaded from Apollo, QC'd, and merged with NCBI Halyomorpha halys Annotation Release 100 using the GFF3toolkit software (https://github.com/NAL-i5K/GFF3toolkit/releases/tag/v1.4.4). The resulting merged dataset was formatted for ingest into the i5k Workspace and GenBank databases, resulting in Halyomorpha halys Official Gene Set (OGS) v1.0.
- Halymorpha halys Official Gene Set OGSv1.0Data
The attached tar.gz archive (halhal_OGSv1.0.tar.gz) contains the following...
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Ag Data Commons
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005:040 - Department of Agriculture - National Research
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005:18 - Agricultural Research Service