High-throughput phenotyping data from a proximal sensing cart

This data was collected using a proximal sensing cart on an upland cotton population grown in Maricopa, Arizona in 2018. The data contains spectral reflectance from Crop Circle ACS-470 sensors, canopy height from Pepperl+Fuchs UC2000 ultrasonic transducers, and canopy temperature from Apogee SI-131 infrared thermometers. Cart position was recorded by an A101 Hemisphere GNSS receiver, and heading was recorded by a VectorNav VN-100 inertial measurement unit. All data can be matched by the timestamp provided by the Campbell Scientific CR-3000 data logger. Data was collected at a rate of 5Hz with analog signals recorded as 0-5V potentials.

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2018_Logger output xlsx Dataset data dictionary
This file describes the sensors used on the cart and shows their output...
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2018_Sensor offsetsxlsx
This file provides the offset of each sensor from the Hemisphere GNSS...
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2018_F119_Plot coordinatescsv
This table provides the four corners of the F119 experimental plots in...
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2018_05_11_F119zip
This folder contains the Campbell logger output files (.dat) (see Logger...
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2018_05_23_F119zip
This folder contains the Campbell logger output files (.dat) (see Logger...
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2018_06_01_F119zip
This folder contains the Campbell logger output files (.dat) (see Logger...
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2018_06_13_F119zip
This folder contains the Campbell logger output files (.dat) (see Logger...
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2018_07_03_F119zip
This folder contains the Campbell logger output files (.dat) (see Logger...
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2018_07_19_F119zip
This folder contains the Campbell logger output files (.dat) (see Logger...
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2018_08_01_F119zip
This folder contains the Campbell logger output files (.dat) (see Logger...
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Field	Value
Tags	Field-based high-throughput phenotyping np301
Modified	2021-02-02
Release Date	2021-01-28
Frequency	Biweekly
Identifier	a420eec1-ee8b-4284-b6b1-c386943dbb83
Spatial / Geographical Coverage Area	POINT (-111.97434425463 33.068519450071)
Publisher	Ag Data Commons
Spatial / Geographical Coverage Location	F119 at Maricopa Agricultural Research Center in Maricopa Arizona, 85138
Temporal Coverage	May 11, 2018 to August 1, 2018
License	U.S. Public Domain
Data Dictionary	https://data.nal.usda.gov/dataset/high-throughput-phenotyping-data-proxi...
Contact Name	Thompson, Alison
Contact Email	alison.thompson@usda.gov
Public Access Level	Public
Program Code	005:040 - Department of Agriculture - National Research
Bureau Code	005:00 - Department of Agriculture

Extended Metadata:

Field	Value
Authors	Thompson, Alison L. (Scopus Author ID) Conley, Matthew M. (Scopus Author ID) Roybal, Michael
Peer Reviewed	No
Intended Use	This data set provides the raw, unprocessed data from a proximal sensing cart to be used as a learning tool for geospatial data processing. The expected outcome of this data is to teach students and collaborators about geospatial processing and provide a real dataset by which to develop and validate geospatial processing pipelines.
Use Limitations	Occasional drops in the logger communication or GNSS receiver caused some data strings to be incomplete. As this is typical of proximal sensing datasets the strings were retained for training purposes as processing pipelines should be able to deal with incomplete datasets.
Equipment or Software Used	Custom built proximal sensing cart
Funding Sources	Cotton Incorporated 13-738 Agricultural Research Service 2020-2100-013-00D
Related Articles	Thompson, A. L., Thorp, K. R., Conley, M., Andrade-Sanchez, P., Heun, J. T., Dyer, J. M., & White, J. W. (2018). Deploying a Proximal Sensing Cart to Identify Drought-Adaptive Traits in Upland Cotton for High-Throughput Phenotyping. Frontiers in Plant Science, 9. https://doi.org/10.3389/fpls.2018.00507 Thompson, A., Thorp, K., Conley, M., Elshikha, D., French, A., Andrade-Sanchez, P., & Pauli, D. (2019). Comparing Nadir and Multi-Angle View Sensor Technologies for Measuring in-Field Plant Height of Upland Cotton. Remote Sensing, 11(6), 700. https://doi.org/10.3390/rs11060700
Method Citation	Thompson, A. L., Thorp, K. R., Conley, M. M., Roybal, M., Moller, D., & Long, J. C. (2020). A data workflow to support plant breeding decisions from a terrestrial field-based high-throughput plant phenotyping system. Plant Methods, 16(1). https://doi.org/10.1186/s13007-020-00639-9
Dataset DOI (digital object identifier)	10.15482/USDA.ADC/1520740
Product Type	Dataset

Field	Value
OSTI Identifier
ISO Topic(s)	farming geoscientificInformation
State or Territory	Arizona
National Agricultural Library Thesaurus Term	phenotype spectral analysis canopy canopy height reflectance electronic sensing spatial data cotton geospatial data processing
Ag Data Commons Keywords	Agricultural Products Plants Fiber Cotton Agricultural Products Plants Fiber Agricultural Products Plants Agricultural Products Maps & Multimedia GIS Data and Images Maps & Multimedia Plants & Crops

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